myRT

myRT report for GCA_003410705.2_ASM341070v2

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Seq: QVAZ02000001.1 Pseudomonas aeruginosa strain PABL097 NODE_1_length_392227_cov_87.8622, whole genome shotgun sequence (392227 bp)
Overview 1 RT 1: 243296-253536 bp Neighborhood of RT #1 [243296, 253538] SmaI RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 243296-243586 bp Feature: gene Location: 243881-244639 bp Feature: domain Description: SmaI Location: 243917-244622 bp Feature: domain Description: SmaI Location: 24391 7-244622 bp Feature: gene Location: 245075-246760 bp Feature: RT Description: RVT_N Location: 245132-245372 bp Feature: RT Description: RVT_N Location: 2451 32-245372 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245420-246056 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 245420-246056 bp Feature: domain Description: GIIM Note: maturase Location: 246110-246341 bp Feature: domain Description: GIIM Note: maturase Location: 2461 1 0-246341 bp Feature: domain Description: HNH Note: nucleases Location: 246593-246731 bp Feature: domain Description: HNH Note: nucleases Location: 246593-246731 bp Feature: gene Location: 247841-251578 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 247949-248606 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 247949-248606 bp Feature: domain Description: PRK09776 Location: 248819-249290 bp Feature: domain Description: PRK09776 Location: 24881 9-249290 bp Feature: domain Description: PAS Location: 249335-249872 bp Feature: domain Description: PAS Location: 249335-249872 bp Feature: domain Description: PRK10060 Location: 249881-251528 bp Feature: domain Description: PRK1 0060 Location: 249881 -251 528 bp Feature: gene Location: 251685-253538 bp Feature: domain Description: PRK05658 Location: 251697-253536 bp Feature: domain Description: PRK05658 Location: 251 697-253536 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SmaI (pfam17411), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)