myRT

myRT report for GCA_003410835.1_ASM341083v1

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Seq: QVBC01000025.1 Pseudomonas aeruginosa strain PABL094 NODE_25_length_94065_cov_66.5259, whole genome shotgun sequence (94065 bp)
Overview 1 RT 1: 54658-59845 bp Neighborhood of RT #1 [54658, 59859] 8a0102 IS5 RVT-GII GIIM IS5 cztR_silR_copR Feature: gene Location: 54658-55770 bp Feature: domain Description: 8a0102 Location: 54928-55741 bp Feature: domain Description: 8a01 02 Location: 54928-55741 bp Feature: gene Location: 55933-56391 bp Feature: domain Description: IS5 Location: 55936-56359 bp Feature: domain Description: IS5 Location: 55936-56359 bp Feature: gene Location: 56463-57731 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56676-57333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 56676-57333 bp Feature: domain Description: GIIM Note: maturase Location: 57411-57633 bp Feature: domain Description: GIIM Note: maturase Location: 5741 1 -57633 bp Feature: gene Location: 58224-58763 bp Feature: domain Description: IS5 Location: 58413-58740 bp Feature: domain Description: IS5 Location: 5841 3-58740 bp Feature: gene Location: 59185-59859 bp Feature: domain Description: cztR_silR_copR Location: 59194-59845 bp Feature: domain Description: cztR_silR_copR Location: 591 94-59845 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 8a0102 (TIGR00999), IS5 (COG3039), RVT-GII, GIIM (pfam08388), cztR_silR_copR (TIGR01387)

Seq: QVBC01000002.1 Pseudomonas aeruginosa strain PABL094 NODE_2_length_288912_cov_65.7165, whole genome shotgun sequence (288912 bp)
Overview 1 RT 1: 206620-217353 bp Neighborhood of RT #1 [206620, 217355] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 206620-206835 bp Feature: domain Description: NERD Location: 206647-206770 bp Feature: domain Description: NERD Location: 2 06647-2 06770 bp Feature: gene Location: 207048-208169 bp Feature: domain Description: COG3177 Location: 207066-208158 bp Feature: domain Description: COG3177 Location: 2 07066-2 08158 bp Feature: gene Location: 208892-210577 bp Feature: RT Description: RVT_N Location: 208949-209189 bp Feature: RT Description: RVT_N Location: 2 08949-2 09189 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 209237-209873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 092 37-2 09873 bp Feature: domain Description: GIIM Note: maturase Location: 209927-210158 bp Feature: domain Description: GIIM Note: maturase Location: 2 0992 7-2 10158 bp Feature: domain Description: HNH Note: nucleases Location: 210410-210548 bp Feature: domain Description: HNH Note: nucleases Location: 2 10410-2 10548 bp Feature: gene Location: 211658-215395 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 211766-212423 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 11766-2 12 42 3 bp Feature: domain Description: PRK09776 Location: 212636-213107 bp Feature: domain Description: PRK09776 Location: 2 12 636-2 13107 bp Feature: domain Description: PAS Location: 213164-213689 bp Feature: domain Description: PAS Location: 2 13164-2 13689 bp Feature: domain Description: PRK10060 Location: 213701-215345 bp Feature: domain Description: PRK10060 Location: 2 13701-2 15345 bp Feature: gene Location: 215502-217355 bp Feature: domain Description: PRK05658 Location: 215514-217353 bp Feature: domain Description: PRK05658 Location: 2 15514-2 17353 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)