myRT

myRT report for GCA_003410855.2_ASM341085v2

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Seq: QVBU02000037.1 Pseudomonas aeruginosa strain PABL075 NODE_37_length_66197_cov_122.664, whole genome shotgun sequence (66197 bp)
Overview 1 RT 1: 128-4699 bp Neighborhood of RT #1 [128, 4911] RVT-UG5 nitrilase COG4127 TIGR02646 Feature: gene Location: 128-2608 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 131-560 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 31 -560 bp Feature: domain Description: nitrilase Location: 1922-2504 bp Feature: domain Description: nitrilase Location: 1 922-2504 bp Feature: gene Location: 2978-3970 bp Feature: domain Description: COG4127 Location: 2984-3959 bp Feature: domain Description: COG41 27 Location: 2984-3959 bp Feature: gene Location: 4033-4911 bp Feature: domain Description: TIGR02646 Location: 4246-4699 bp Feature: domain Description: TIGR02646 Location: 4246-4699 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), TIGR02646 (TIGR02646 family protein)

Seq: QVBU02000003.1 Pseudomonas aeruginosa strain PABL075 NODE_3_length_233045_cov_99.6634, whole genome shotgun sequence (233045 bp)
Overview 1 RT 1: 133341-144588 bp 2 RT 2: 160847-169669 bp Neighborhood of RT #1 [133341, 144590] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [160847, 169698] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 133341-134111 bp Feature: domain Description: NERD Location: 133440-133773 bp Feature: domain Description: NERD Location: 133440-133773 bp Feature: domain Description: zf-C4_Topoisom Location: 133992-134106 bp Feature: domain Description: zf-C4_Topoisom Location: 133992 -134106 bp Feature: gene Location: 134283-135404 bp Feature: domain Description: COG3177 Location: 134301-135393 bp Feature: domain Description: COG3177 Location: 134301-135393 bp Feature: gene Location: 136127-137812 bp Feature: domain Description: RVT_N Location: 136184-136424 bp Feature: domain Description: RVT_N Location: 136184-13642 4 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136472-137108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136472 -137108 bp Feature: domain Description: GIIM Note: maturase Location: 137162-137393 bp Feature: domain Description: GIIM Note: maturase Location: 137162 -137393 bp Feature: domain Description: HNH Note: nucleases Location: 137645-137783 bp Feature: domain Description: HNH Note: nucleases Location: 137645-137783 bp Feature: gene Location: 138893-142630 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 139001-139658 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 139001-139658 bp Feature: domain Description: PRK09776 Location: 139871-140342 bp Feature: domain Description: PRK09776 Location: 139871-140342 bp Feature: domain Description: PAS Location: 140399-140924 bp Feature: domain Description: PAS Location: 140399-14092 4 bp Feature: domain Description: PRK10060 Location: 140936-142580 bp Feature: domain Description: PRK10060 Location: 140936-142 580 bp Feature: gene Location: 142737-144590 bp Feature: domain Description: PRK05658 Location: 142749-144588 bp Feature: domain Description: PRK05658 Location: 142 749-144588 bp Feature: gene Location: 160847-162061 bp Feature: domain Description: PRK10770 Location: 160859-162053 bp Feature: domain Description: PRK10770 Location: 160859-162 053 bp Feature: gene Location: 162120-164894 bp Feature: domain Description: LptD Location: 162315-164880 bp Feature: domain Description: LptD Location: 162 315-164880 bp Feature: gene Location: 165027-166739 bp Feature: domain Description: RVT_N Location: 165084-165327 bp Feature: domain Description: RVT_N Location: 165084-16532 7 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165372-166008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165372 -166008 bp Feature: domain Description: YkfC Location: 166218-166368 bp Feature: domain Description: YkfC Location: 1662 18-166368 bp Feature: domain Description: HNH Note: nucleases Location: 166545-166683 bp Feature: domain Description: HNH Note: nucleases Location: 166545-166683 bp Feature: gene Location: 168011-169027 bp Feature: domain Description: COG3178 Location: 168014-169013 bp Feature: domain Description: COG3178 Location: 168014-169013 bp Feature: gene Location: 169024-169698 bp Feature: domain Description: NTP_transferase_like_1 Location: 169030-169669 bp Feature: domain Description: NTP_transferase_like_1 Location: 169030-169669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)