myRT

myRT report for GCA_003410875.1_ASM341087v1

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Seq: QVBX01000014.1 Pseudomonas aeruginosa strain PABL072 NODE_14_length_133438_cov_59.951, whole genome shotgun sequence (133438 bp)
Overview 1 RT 1: 1-5389 bp Neighborhood of RT #1 [1, 5586] RVT-GII GIIM CHD CHD Feature: gene Location: 1-351 bp Feature: gene Location: 779-2047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1 649 bp Feature: domain Description: GIIM Note: maturase Location: 1727-1949 bp Feature: domain Description: GIIM Note: maturase Location: 1 727-1 949 bp Feature: gene Location: 2779-2958 bp Feature: gene Location: 4042-5586 bp Feature: domain Description: CHD Location: 4258-4672 bp Feature: domain Description: CHD Location: 4258-4672 bp Feature: domain Description: CHD Location: 4900-5389 bp Feature: domain Description: CHD Location: 4900-5389 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT CHD (cd07302), RVT-GII, GIIM (pfam08388)

Seq: QVBX01000002.1 Pseudomonas aeruginosa strain PABL072 NODE_2_length_315371_cov_61.2161, whole genome shotgun sequence (315371 bp)
Overview 1 RT 1: 231236-243720 bp Neighborhood of RT #1 [231236, 243722] IMPa_N_2 IMPa_helical Peptidase_M60 HipA_C RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 231236-233962 bp Feature: domain Description: IMPa_N_2 Location: 231443-232025 bp Feature: domain Description: IMPa_N_2 Location: 2 31443-2 32 02 5 bp Feature: domain Description: IMPa_helical Location: 232106-232433 bp Feature: domain Description: IMPa_helical Location: 2 32 106-2 32 433 bp Feature: domain Description: Peptidase_M60 Location: 232877-233807 bp Feature: domain Description: Peptidase_M60 Location: 2 32 877-2 33807 bp Feature: gene Location: 234638-234955 bp Feature: domain Description: HipA_C Location: 234671-234839 bp Feature: domain Description: HipA_C Location: 2 34671-2 34839 bp Feature: gene Location: 235259-236944 bp Feature: RT Description: RVT_N Location: 235316-235556 bp Feature: RT Description: RVT_N Location: 2 35316-2 35556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 235604-236240 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 35604-2 362 40 bp Feature: domain Description: GIIM Note: maturase Location: 236294-236525 bp Feature: domain Description: GIIM Note: maturase Location: 2 362 94-2 3652 5 bp Feature: domain Description: HNH Note: nucleases Location: 236777-236915 bp Feature: domain Description: HNH Note: nucleases Location: 2 36777-2 36915 bp Feature: gene Location: 238025-241762 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 238133-238790 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 2 38133-2 38790 bp Feature: domain Description: PRK09776 Location: 239003-239474 bp Feature: domain Description: PRK09776 Location: 2 39003-2 39474 bp Feature: domain Description: PAS Location: 239519-240056 bp Feature: domain Description: PAS Location: 2 39519-2 40056 bp Feature: domain Description: PRK10060 Location: 240065-241712 bp Feature: domain Description: PRK10060 Location: 2 40065-2 41712 bp Feature: gene Location: 241869-243722 bp Feature: domain Description: PRK05658 Location: 241881-243720 bp Feature: domain Description: PRK05658 Location: 2 41881-2 4372 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IMPa_N_2 (pfam18650), IMPa_helical (pfam18642), Peptidase_M60 (pfam13402), HipA_C (pfam07804), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: QVBX01000032.1 Pseudomonas aeruginosa strain PABL072 NODE_32_length_78435_cov_66.0668, whole genome shotgun sequence (78435 bp)
Overview 1 RT 1: 66484-71332 bp Neighborhood of RT #1 [66484, 71361] KfrA_N RVT-GII AlpA Feature: gene Location: 66484-66705 bp Feature: gene Location: 66705-67343 bp Feature: domain Description: KfrA_N Location: 66723-67062 bp Feature: domain Description: KfrA_N Location: 66723 -67062 bp Feature: gene Location: 67753-69498 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 68437-69127 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6843 7-69127 bp Feature: gene Location: 70193-71113 bp Feature: gene Location: 71149-71361 bp Feature: domain Description: AlpA Location: 71152-71332 bp Feature: domain Description: AlpA Location: 71152-713 3 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT KfrA_N (pfam11740), RVT-GII, AlpA (COG3311)