myRT

myRT report for GCA_003410925.1_ASM341092v1

Download annotations/find similar RTs

Seq: QVBJ01000011.1 Pseudomonas aeruginosa strain PABL086 NODE_11_length_142147_cov_85.0735, whole genome shotgun sequence (142147 bp)
Overview 1 RT 1: 57035-67768 bp 2 RT 2: 84026-92846 bp Neighborhood of RT #1 [57035, 67770] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [84026, 92875] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 57035-57250 bp Feature: domain Description: NERD Location: 57062-57185 bp Feature: domain Description: NERD Location: 57062-571 85 bp Feature: gene Location: 57463-58584 bp Feature: domain Description: COG3177 Location: 57481-58573 bp Feature: domain Description: COG31 77 Location: 57481 -58573 bp Feature: gene Location: 59307-60992 bp Feature: RT Description: RVT_N Location: 59364-59604 bp Feature: RT Description: RVT_N Location: 59364-59604 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59652-60288 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59652-60288 bp Feature: domain Description: GIIM Note: maturase Location: 60342-60573 bp Feature: domain Description: GIIM Note: maturase Location: 60342-60573 bp Feature: domain Description: HNH Note: nucleases Location: 60825-60963 bp Feature: domain Description: HNH Note: nucleases Location: 60825-60963 bp Feature: gene Location: 62073-65810 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 62181-62838 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 621 81 -62838 bp Feature: domain Description: PRK09776 Location: 63051-63522 bp Feature: domain Description: PRK09776 Location: 63051 -63522 bp Feature: domain Description: PAS Location: 63579-64104 bp Feature: domain Description: PAS Location: 63579-641 04 bp Feature: domain Description: PRK10060 Location: 64116-65760 bp Feature: domain Description: PRK1 0060 Location: 641 1 6-65760 bp Feature: gene Location: 65917-67770 bp Feature: domain Description: PRK05658 Location: 65929-67768 bp Feature: domain Description: PRK05658 Location: 65929-67768 bp Feature: gene Location: 84026-85240 bp Feature: domain Description: PRK10770 Location: 84038-85232 bp Feature: domain Description: PRK1 0770 Location: 84038-85232 bp Feature: gene Location: 85299-88070 bp Feature: domain Description: LptD Location: 85494-88056 bp Feature: domain Description: LptD Location: 85494-88056 bp Feature: gene Location: 88203-89915 bp Feature: RT Description: RVT_N Location: 88260-88503 bp Feature: RT Description: RVT_N Location: 88260-88503 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88548-89184 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 88548-891 84 bp Feature: domain Description: YkfC Location: 89394-89544 bp Feature: domain Description: YkfC Location: 89394-89544 bp Feature: domain Description: HNH Note: nucleases Location: 89721-89859 bp Feature: domain Description: HNH Note: nucleases Location: 89721 -89859 bp Feature: gene Location: 91188-92204 bp Feature: domain Description: COG3178 Location: 91191-92190 bp Feature: domain Description: COG31 78 Location: 91 1 91 -921 90 bp Feature: gene Location: 92201-92875 bp Feature: domain Description: NTP_transferase_like_1 Location: 92207-92846 bp Feature: domain Description: NTP_transferase_like_1 Location: 92207-92846 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: QVBJ01000003.1 Pseudomonas aeruginosa strain PABL086 NODE_3_length_225356_cov_81.9109, whole genome shotgun sequence (225356 bp)
Overview 1 RT 1: 156500-162086 bp Neighborhood of RT #1 [156500, 162086] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 156500-157336 bp Feature: domain Description: HDOD Location: 156503-157331 bp Feature: domain Description: HDOD Location: 156503-157331 bp Feature: gene Location: 157437-158381 bp Feature: domain Description: YgfZ Location: 157446-158346 bp Feature: domain Description: YgfZ Location: 157446-158346 bp Feature: gene Location: 160104-161423 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160107-160683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 160107-160683 bp Feature: domain Description: YkfC Location: 160881-161037 bp Feature: domain Description: YkfC Location: 160881-161037 bp Feature: domain Description: HNH Note: nucleases Location: 161220-161358 bp Feature: domain Description: HNH Note: nucleases Location: 1612 2 0-161358 bp Feature: gene Location: 161499-161753 bp Feature: domain Description: SdhE Location: 161505-161745 bp Feature: domain Description: SdhE Location: 161505-161745 bp Feature: gene Location: 161892-162086 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: QVBJ01000096.1 Pseudomonas aeruginosa strain PABL086 NODE_96_length_13806_cov_90.596, whole genome shotgun sequence (13806 bp)
Overview 1 RT 1: 10849-13803 bp Neighborhood of RT #1 [10849, 13803] RVT-GII GIIM Feature: gene Location: 10849-11028 bp Feature: gene Location: 11212-11610 bp Feature: gene Location: 11760-13028 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11973-12630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11973 -1263 0 bp Feature: domain Description: GIIM Note: maturase Location: 12708-12930 bp Feature: domain Description: GIIM Note: maturase Location: 12708-1293 0 bp Feature: gene Location: 13591-13803 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)