myRT

myRT report for GCA_003410975.1_ASM341097v1

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Seq: QVCH01000002.1 Pseudomonas aeruginosa strain PABL062 NODE_2_length_284838_cov_41.6971, whole genome shotgun sequence (284838 bp)
Overview 1 RT 1: 199726-210459 bp 2 RT 2: 226717-235537 bp Neighborhood of RT #1 [199726, 210461] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [226717, 235566] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 199726-199941 bp Feature: domain Description: NERD Location: 199753-199876 bp Feature: domain Description: NERD Location: 1 99753-1 99876 bp Feature: gene Location: 200154-201275 bp Feature: domain Description: COG3177 Location: 200172-201264 bp Feature: domain Description: COG31 77 Location: 2001 72-201 264 bp Feature: gene Location: 201998-203683 bp Feature: RT Description: RVT_N Location: 202055-202295 bp Feature: RT Description: RVT_N Location: 202055-202295 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202343-202979 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 202343-202979 bp Feature: domain Description: GIIM Note: maturase Location: 203033-203264 bp Feature: domain Description: GIIM Note: maturase Location: 203033-203264 bp Feature: domain Description: HNH Note: nucleases Location: 203516-203654 bp Feature: domain Description: HNH Note: nucleases Location: 20351 6-203654 bp Feature: gene Location: 204764-208501 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 204872-205529 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 204872-205529 bp Feature: domain Description: PRK09776 Location: 205742-206213 bp Feature: domain Description: PRK09776 Location: 205742-20621 3 bp Feature: domain Description: PAS Location: 206270-206795 bp Feature: domain Description: PAS Location: 206270-206795 bp Feature: domain Description: PRK10060 Location: 206807-208451 bp Feature: domain Description: PRK1 0060 Location: 206807-208451 bp Feature: gene Location: 208608-210461 bp Feature: domain Description: PRK05658 Location: 208620-210459 bp Feature: domain Description: PRK05658 Location: 208620-21 0459 bp Feature: gene Location: 226717-227931 bp Feature: domain Description: PRK10770 Location: 226729-227923 bp Feature: domain Description: PRK1 0770 Location: 226729-227923 bp Feature: gene Location: 227990-230761 bp Feature: domain Description: LptD Location: 228185-230747 bp Feature: domain Description: LptD Location: 2281 85-230747 bp Feature: gene Location: 230894-232606 bp Feature: RT Description: RVT_N Location: 230951-231194 bp Feature: RT Description: RVT_N Location: 230951 -231 1 94 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231239-231875 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 239-231 875 bp Feature: domain Description: YkfC Location: 232085-232235 bp Feature: domain Description: YkfC Location: 232085-232235 bp Feature: domain Description: HNH Note: nucleases Location: 232412-232550 bp Feature: domain Description: HNH Note: nucleases Location: 23241 2-232550 bp Feature: gene Location: 233879-234895 bp Feature: domain Description: COG3178 Location: 233882-234881 bp Feature: domain Description: COG31 78 Location: 233882-234881 bp Feature: gene Location: 234892-235566 bp Feature: domain Description: NTP_transferase_like_1 Location: 234898-235537 bp Feature: domain Description: NTP_transferase_like_1 Location: 234898-235537 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: QVCH01000094.1 Pseudomonas aeruginosa strain PABL062 NODE_94_length_13783_cov_44.1404, whole genome shotgun sequence (13783 bp)
Overview 1 RT 1: 10826-13780 bp Neighborhood of RT #1 [10826, 13780] RVT-GII GIIM Feature: gene Location: 10826-11005 bp Feature: gene Location: 11189-11587 bp Feature: gene Location: 11737-13005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11950-12607 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11950-12 607 bp Feature: domain Description: GIIM Note: maturase Location: 12685-12907 bp Feature: domain Description: GIIM Note: maturase Location: 12 685-12 907 bp Feature: gene Location: 13568-13780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)