myRT

myRT report for GCA_003411035.2_ASM341103v2

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Seq: QVBN02000001.1 Pseudomonas aeruginosa strain PABL082 NODE_1_length_374987_cov_70.6539, whole genome shotgun sequence (374987 bp)
Overview 1 RT 1: 128448-138745 bp Neighborhood of RT #1 [128448, 138756] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 128448-130301 bp Feature: domain Description: PRK05658 Location: 128460-130299 bp Feature: domain Description: PRK05658 Location: 1 28460-1 30299 bp Feature: gene Location: 130408-134145 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 130516-131173 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 3051 6-1 31 1 73 bp Feature: domain Description: PRK09776 Location: 131386-131869 bp Feature: domain Description: PRK09776 Location: 1 31 386-1 31 869 bp Feature: domain Description: PAS Location: 131935-132439 bp Feature: domain Description: PAS Location: 1 31 935-1 32439 bp Feature: domain Description: PRK10060 Location: 132448-134095 bp Feature: domain Description: PRK1 0060 Location: 1 32448-1 34095 bp Feature: gene Location: 135226-136911 bp Feature: domain Description: RVT_N Location: 135283-135523 bp Feature: domain Description: RVT_N Location: 1 35283-1 35523 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135571-136207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 35571 -1 36207 bp Feature: domain Description: GIIM Note: maturase Location: 136261-136492 bp Feature: domain Description: GIIM Note: maturase Location: 1 36261 -1 36492 bp Feature: domain Description: HNH Note: nucleases Location: 136744-136882 bp Feature: domain Description: HNH Note: nucleases Location: 1 36744-1 36882 bp Feature: gene Location: 137239-137376 bp Feature: gene Location: 137635-138756 bp Feature: domain Description: COG3177 Location: 137653-138745 bp Feature: domain Description: COG31 77 Location: 1 37653-1 38745 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )

Seq: QVBN02000062.1 Pseudomonas aeruginosa strain PABL082 NODE_62_length_25571_cov_65.3091, whole genome shotgun sequence (25571 bp)
Overview 1 RT 1: 12841-24167 bp Neighborhood of RT #1 [12841, 24167] RhsA RhsA RhsA RhsA RHS_repeat RhsA RVT-UG1 SMC_prok_B SMC_prok_B Feature: gene Location: 12841-14430 bp Feature: domain Description: RhsA Location: 13447-14419 bp Feature: domain Description: RhsA Location: 13447-14419 bp Feature: gene Location: 14445-17150 bp Feature: domain Description: RhsA Location: 14577-15111 bp Feature: domain Description: RhsA Location: 14577-15111 bp Feature: domain Description: RhsA Location: 15129-15603 bp Feature: domain Description: RhsA Location: 1512 9-15603 bp Feature: domain Description: RhsA Location: 15612-15918 bp Feature: domain Description: RhsA Location: 15612 -15918 bp Feature: domain Description: RHS_repeat Location: 15948-15999 bp Feature: domain Description: RHS_repeat Location: 15948-15999 bp Feature: domain Description: RhsA Location: 16002-16791 bp Feature: domain Description: RhsA Location: 16002 -16791 bp Feature: gene Location: 17885-21328 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 18131-18608 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 18131-18608 bp Feature: gene Location: 21787-23511 bp Feature: domain Description: SMC_prok_B Location: 22276-22570 bp Feature: domain Description: SMC_prok_B Location: 2 2 2 76-2 2 570 bp Feature: domain Description: SMC_prok_B Location: 22699-23020 bp Feature: domain Description: SMC_prok_B Location: 2 2 699-2 302 0 bp Feature: gene Location: 23661-24167 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RhsA (COG3209), RHS_repeat (pfam05593), RVT-UG1, SMC_prok_B (TIGR02168)

Seq: QVBN02000006.1 Pseudomonas aeruginosa strain PABL082 NODE_6_length_225389_cov_74.759, whole genome shotgun sequence (225389 bp)
Overview 1 RT 1: 43911-47957 bp Neighborhood of RT #1 [43911, 47986] RVT-GII GIIM DUF3085 Feature: gene Location: 43911-44627 bp Feature: gene Location: 44982-45626 bp Feature: gene Location: 45219-46418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45384-45999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 453 84-45999 bp Feature: domain Description: GIIM Note: maturase Location: 46056-46272 bp Feature: domain Description: GIIM Note: maturase Location: 46056-46272 bp Feature: gene Location: 46758-47555 bp Feature: gene Location: 47621-47986 bp Feature: domain Description: DUF3085 Location: 47687-47957 bp Feature: domain Description: DUF3 085 Location: 47687-47957 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DUF3085 (pfam11284)