myRT

myRT report for GCA_003411095.1_ASM341109v1

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Seq: QVCK01000162.1 Pseudomonas aeruginosa strain PABL059 NODE_163_length_2991_cov_153.459, whole genome shotgun sequence (2991 bp)
Overview 1 RT 1: 718-2861 bp Neighborhood of RT #1 [718, 2917] RVT_N RVT-GII YkfC HNHc Feature: gene Location: 718-846 bp Feature: gene Location: 920-1114 bp Feature: gene Location: 1211-2917 bp Feature: domain Description: RVT_N Location: 1268-1511 bp Feature: domain Description: RVT_N Location: 1 268-1 51 1 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1556-2192 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 556-21 92 bp Feature: domain Description: YkfC Location: 2390-2495 bp Feature: domain Description: YkfC Location: 2390-2495 bp Feature: domain Description: HNHc Note: nucleases Location: 2705-2861 bp Feature: domain Description: HNHc Note: nucleases Location: 2705-2861 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNHc (smart00507)

Seq: QVCK01000169.1 Pseudomonas aeruginosa strain PABL059 NODE_170_length_2421_cov_178.253, whole genome shotgun sequence (2421 bp)
Overview 1 RT 1: 1-2289 bp Neighborhood of RT #1 [1, 2336] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 1-189 bp Feature: gene Location: 220-348 bp Feature: gene Location: 618-2336 bp Feature: domain Description: RVT_N Location: 675-912 bp Feature: domain Description: RVT_N Location: 675-912 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1614 bp Feature: domain Description: GIIM Note: maturase Location: 1668-1899 bp Feature: domain Description: GIIM Note: maturase Location: 1668-1899 bp Feature: domain Description: HNHc Note: nucleases Location: 2133-2289 bp Feature: domain Description: HNHc Note: nucleases Location: 2 133-2 2 89 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: QVCK01000046.1 Pseudomonas aeruginosa strain PABL059 NODE_46_length_52864_cov_70.897, whole genome shotgun sequence (52864 bp)
Overview 1 RT 1: 128-6372 bp Neighborhood of RT #1 [128, 6659] RVT-UG5 nitrilase COG4127 restrict_AAA_1 restrict_AAA_1 Feature: gene Location: 128-2608 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 131-560 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 13 1-560 bp Feature: domain Description: nitrilase Location: 1922-2504 bp Feature: domain Description: nitrilase Location: 1922-2504 bp Feature: gene Location: 2978-3970 bp Feature: domain Description: COG4127 Location: 2984-3959 bp Feature: domain Description: COG4127 Location: 2984-3 959 bp Feature: gene Location: 4908-6659 bp Feature: domain Description: restrict_AAA_1 Location: 4911-5658 bp Feature: domain Description: restrict_AAA_1 Location: 4911-5658 bp Feature: domain Description: restrict_AAA_1 Location: 5985-6372 bp Feature: domain Description: restrict_AAA_1 Location: 5985-63 72 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), restrict_AAA_1 (TIGR04435)