myRT

myRT report for GCA_003411125.1_ASM341112v1

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Seq: QVDD01000101.1 Pseudomonas aeruginosa strain PABL038 NODE_101_length_13801_cov_89.527, whole genome shotgun sequence (13773 bp)
Overview 1 RT 1: 1-2958 bp Neighborhood of RT #1 [1, 2958] RVT-GII GIIM Feature: gene Location: 1-216 bp Feature: gene Location: 779-2047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1 649 bp Feature: domain Description: GIIM Note: maturase Location: 1727-1949 bp Feature: domain Description: GIIM Note: maturase Location: 1 727-1 949 bp Feature: gene Location: 2197-2595 bp Feature: gene Location: 2779-2958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QVDD01000005.1 Pseudomonas aeruginosa strain PABL038 NODE_5_length_177296_cov_76.2095, whole genome shotgun sequence (177296 bp)
Overview 1 RT 1: 92184-102917 bp 2 RT 2: 119175-127995 bp Neighborhood of RT #1 [92184, 102919] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [119175, 128024] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 92184-92399 bp Feature: domain Description: NERD Location: 92211-92334 bp Feature: domain Description: NERD Location: 92 2 11-92 334 bp Feature: gene Location: 92612-93733 bp Feature: domain Description: COG3177 Location: 92630-93722 bp Feature: domain Description: COG3177 Location: 92 630-9372 2 bp Feature: gene Location: 94456-96141 bp Feature: domain Description: RVT_N Location: 94513-94753 bp Feature: domain Description: RVT_N Location: 94513-94753 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94801-95437 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94801-95437 bp Feature: domain Description: GIIM Note: maturase Location: 95491-95722 bp Feature: domain Description: GIIM Note: maturase Location: 95491-9572 2 bp Feature: domain Description: HNH Note: nucleases Location: 95974-96112 bp Feature: domain Description: HNH Note: nucleases Location: 95974-96112 bp Feature: gene Location: 97222-100959 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 97330-97987 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 97330-97987 bp Feature: domain Description: PRK09776 Location: 98200-98671 bp Feature: domain Description: PRK09776 Location: 982 00-98671 bp Feature: domain Description: PAS Location: 98728-99253 bp Feature: domain Description: PAS Location: 9872 8-992 53 bp Feature: domain Description: PRK10060 Location: 99265-100909 bp Feature: domain Description: PRK10060 Location: 992 65-100909 bp Feature: gene Location: 101066-102919 bp Feature: domain Description: PRK05658 Location: 101078-102917 bp Feature: domain Description: PRK05658 Location: 101078-102 917 bp Feature: gene Location: 119175-120389 bp Feature: domain Description: PRK10770 Location: 119187-120381 bp Feature: domain Description: PRK10770 Location: 119187-12 0381 bp Feature: gene Location: 120448-123219 bp Feature: domain Description: LptD Location: 120643-123205 bp Feature: domain Description: LptD Location: 12 0643-12 32 05 bp Feature: gene Location: 123352-125064 bp Feature: domain Description: RVT_N Location: 123409-123652 bp Feature: domain Description: RVT_N Location: 12 3409-12 3652 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 123697-124333 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 3697-12 4333 bp Feature: domain Description: YkfC Location: 124543-124693 bp Feature: domain Description: YkfC Location: 12 4543-12 4693 bp Feature: domain Description: HNH Note: nucleases Location: 124870-125008 bp Feature: domain Description: HNH Note: nucleases Location: 12 4870-12 5008 bp Feature: gene Location: 126337-127353 bp Feature: domain Description: COG3178 Location: 126340-127339 bp Feature: domain Description: COG3178 Location: 12 6340-12 7339 bp Feature: gene Location: 127350-128024 bp Feature: domain Description: NTP_transferase_like_1 Location: 127356-127995 bp Feature: domain Description: NTP_transferase_like_1 Location: 12 7356-12 7995 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)

Seq: QVDD01000062.1 Pseudomonas aeruginosa strain PABL038 NODE_62_length_38099_cov_103.738, whole genome shotgun sequence (38099 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-29466 bp Feature: domain Description: YeeA Location: 28552-29332 bp Feature: domain Description: YeeA Location: 28552-293 3 2 bp Feature: gene Location: 29463-32483 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-3 0429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 3 3 109-3 3 178 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 3 3 652-3 3 982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)