myRT

myRT report for GCA_003411145.1_ASM341114v1

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Seq: QVBQ01000028.1 Pseudomonas aeruginosa strain PABL079 NODE_28_length_39639_cov_88.1917, whole genome shotgun sequence (39639 bp)
Overview 1 RT 1: 1747-12417 bp Neighborhood of RT #1 [1747, 12482] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 1747-3600 bp Feature: domain Description: PRK05658 Location: 1759-3598 bp Feature: domain Description: PRK05658 Location: 1 759-3598 bp Feature: gene Location: 3707-7444 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 3815-4472 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 381 5-4472 bp Feature: domain Description: PRK09776 Location: 4685-5156 bp Feature: domain Description: PRK09776 Location: 4685-51 56 bp Feature: domain Description: PAS Location: 5201-5738 bp Feature: domain Description: PAS Location: 5201 -5738 bp Feature: domain Description: PRK10060 Location: 5747-7394 bp Feature: domain Description: PRK1 0060 Location: 5747-7394 bp Feature: gene Location: 8525-10210 bp Feature: RT Description: RVT_N Location: 8582-8822 bp Feature: RT Description: RVT_N Location: 8582-8822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8870-9506 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8870-9506 bp Feature: domain Description: GIIM Note: maturase Location: 9560-9791 bp Feature: domain Description: GIIM Note: maturase Location: 9560-9791 bp Feature: domain Description: HNH Note: nucleases Location: 10043-10181 bp Feature: domain Description: HNH Note: nucleases Location: 1 0043-1 01 81 bp Feature: gene Location: 10933-12054 bp Feature: domain Description: COG3177 Location: 10951-12043 bp Feature: domain Description: COG31 77 Location: 1 0951 -1 2043 bp Feature: gene Location: 12147-12482 bp Feature: domain Description: NERD Location: 12246-12417 bp Feature: domain Description: NERD Location: 1 2246-1 241 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3177 (Fic family protein ), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844)