myRT

myRT report for GCA_003411285.1_ASM341128v1

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Seq: QVCA01000037.1 Pseudomonas aeruginosa strain PABL069 NODE_37_length_60417_cov_101.844, whole genome shotgun sequence (60417 bp)
Overview 1 RT 1: 24395-30270 bp Neighborhood of RT #1 [24395, 30314] DEXHc_Snf RVT_N RVT-GII GIIM HNHc KOG0389 SF2_C_SNF resist_ArsH Feature: gene Location: 24395-24700 bp Feature: gene Location: 24837-25892 bp Feature: domain Description: DEXHc_Snf Location: 25056-25311 bp Feature: domain Description: DEXHc_Snf Location: 25056-2531 1 bp Feature: gene Location: 26489-28207 bp Feature: domain Description: RVT_N Location: 26546-26783 bp Feature: domain Description: RVT_N Location: 26546-26783 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26834-27485 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26834-27485 bp Feature: domain Description: GIIM Note: maturase Location: 27539-27770 bp Feature: domain Description: GIIM Note: maturase Location: 27539-27770 bp Feature: domain Description: HNHc Note: nucleases Location: 28004-28160 bp Feature: domain Description: HNHc Note: nucleases Location: 28004-281 60 bp Feature: gene Location: 28293-29534 bp Feature: domain Description: KOG0389 Location: 28308-28428 bp Feature: domain Description: KOG0389 Location: 28308-28428 bp Feature: domain Description: SF2_C_SNF Location: 28974-29370 bp Feature: domain Description: SF2_C_SNF Location: 28974-29370 bp Feature: gene Location: 29592-30314 bp Feature: domain Description: resist_ArsH Location: 29616-30270 bp Feature: domain Description: resist_ArsH Location: 2961 6-30270 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), resist_ArsH (TIGR02690)

Seq: QVCA01000043.1 Pseudomonas aeruginosa strain PABL069 NODE_43_length_52965_cov_94.8575, whole genome shotgun sequence (52911 bp)
Overview 1 RT 1: 128-6372 bp Neighborhood of RT #1 [128, 6659] RVT-UG5 nitrilase COG4127 restrict_AAA_1 restrict_AAA_1 Feature: gene Location: 128-2608 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 131-560 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 131-560 bp Feature: domain Description: nitrilase Location: 1922-2504 bp Feature: domain Description: nitrilase Location: 192 2 -2 504 bp Feature: gene Location: 2978-3970 bp Feature: domain Description: COG4127 Location: 2984-3959 bp Feature: domain Description: COG412 7 Location: 2 984-3959 bp Feature: gene Location: 4908-6659 bp Feature: domain Description: restrict_AAA_1 Location: 4911-5658 bp Feature: domain Description: restrict_AAA_1 Location: 4911-5658 bp Feature: domain Description: restrict_AAA_1 Location: 5985-6372 bp Feature: domain Description: restrict_AAA_1 Location: 5985-6372 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG5, nitrilase (cl11424), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), restrict_AAA_1 (TIGR04435)

Seq: QVCA01000006.1 Pseudomonas aeruginosa strain PABL069 NODE_6_length_232858_cov_99.1634, whole genome shotgun sequence (232858 bp)
Overview 1 RT 1: 133341-144588 bp 2 RT 2: 160847-169669 bp Neighborhood of RT #1 [133341, 144590] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [160847, 169698] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 133341-134111 bp Feature: domain Description: NERD Location: 133440-133773 bp Feature: domain Description: NERD Location: 13 3 440-13 3 773 bp Feature: domain Description: zf-C4_Topoisom Location: 133992-134106 bp Feature: domain Description: zf-C4_Topoisom Location: 13 3 992-13 4106 bp Feature: gene Location: 134283-135404 bp Feature: domain Description: COG3177 Location: 134301-135393 bp Feature: domain Description: COG3 177 Location: 13 43 01-13 53 93 bp Feature: gene Location: 136127-137812 bp Feature: domain Description: RVT_N Location: 136184-136424 bp Feature: domain Description: RVT_N Location: 13 6184-13 6424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 136472-137108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 6472-13 7108 bp Feature: domain Description: GIIM Note: maturase Location: 137162-137393 bp Feature: domain Description: GIIM Note: maturase Location: 13 7162-13 73 93 bp Feature: domain Description: HNH Note: nucleases Location: 137645-137783 bp Feature: domain Description: HNH Note: nucleases Location: 13 7645-13 7783 bp Feature: gene Location: 138893-142630 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 139001-139658 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 13 9001-13 9658 bp Feature: domain Description: PRK09776 Location: 139871-140342 bp Feature: domain Description: PRK09776 Location: 13 9871-1403 42 bp Feature: domain Description: PAS Location: 140399-140924 bp Feature: domain Description: PAS Location: 1403 99-140924 bp Feature: domain Description: PRK10060 Location: 140936-142580 bp Feature: domain Description: PRK10060 Location: 14093 6-142580 bp Feature: gene Location: 142737-144590 bp Feature: domain Description: PRK05658 Location: 142749-144588 bp Feature: domain Description: PRK05658 Location: 142749-144588 bp Feature: gene Location: 160847-162061 bp Feature: domain Description: PRK10770 Location: 160859-162053 bp Feature: domain Description: PRK10770 Location: 160859-162053 bp Feature: gene Location: 162120-164894 bp Feature: domain Description: LptD Location: 162315-164880 bp Feature: domain Description: LptD Location: 1623 15-164880 bp Feature: gene Location: 165027-166739 bp Feature: domain Description: RVT_N Location: 165084-165327 bp Feature: domain Description: RVT_N Location: 165084-1653 27 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 165372-166005 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1653 72-166005 bp Feature: domain Description: YkfC Location: 166218-166368 bp Feature: domain Description: YkfC Location: 166218-1663 68 bp Feature: domain Description: HNH Note: nucleases Location: 166545-166683 bp Feature: domain Description: HNH Note: nucleases Location: 166545-166683 bp Feature: gene Location: 168011-169027 bp Feature: domain Description: COG3178 Location: 168014-169013 bp Feature: domain Description: COG3 178 Location: 168014-169013 bp Feature: gene Location: 169024-169698 bp Feature: domain Description: NTP_transferase_like_1 Location: 169030-169669 bp Feature: domain Description: NTP_transferase_like_1 Location: 16903 0-169669 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)