myRT

myRT report for GCA_003411365.2_ASM341136v2

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Seq: QVDN02000014.1 Pseudomonas aeruginosa strain PABL027 NODE_14_length_85491_cov_69.5167, whole genome shotgun sequence (85491 bp)
Overview 1 RT 1: 19487-25406 bp Neighborhood of RT #1 [19487, 25406] resist_ArsH KOG0389 SF2_C_SNF RVT_N RVT-GII GIIM HNHc DEXHc_Snf Feature: gene Location: 19487-20209 bp Feature: domain Description: resist_ArsH Location: 19511-20165 bp Feature: domain Description: resist_ArsH Location: 1 951 1 -201 65 bp Feature: gene Location: 20267-21526 bp Feature: domain Description: KOG0389 Location: 20297-20420 bp Feature: domain Description: KOG0389 Location: 20297-20420 bp Feature: domain Description: SF2_C_SNF Location: 20966-21362 bp Feature: domain Description: SF2_C_SNF Location: 20966-21 362 bp Feature: gene Location: 21594-23312 bp Feature: domain Description: RVT_N Location: 21651-21888 bp Feature: domain Description: RVT_N Location: 21 651 -21 888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21939-22590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 939-22590 bp Feature: domain Description: GIIM Note: maturase Location: 22644-22875 bp Feature: domain Description: GIIM Note: maturase Location: 22644-22875 bp Feature: domain Description: HNHc Note: nucleases Location: 23109-23265 bp Feature: domain Description: HNHc Note: nucleases Location: 231 09-23265 bp Feature: gene Location: 23909-24964 bp Feature: domain Description: DEXHc_Snf Location: 24128-24383 bp Feature: domain Description: DEXHc_Snf Location: 241 28-24383 bp Feature: gene Location: 25101-25406 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT resist_ArsH (TIGR02690), KOG0389 (KOG0389, SNF2 family DNA-dependent ATPase ), SF2_C_SNF (cd18793), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DEXHc_Snf (cd17919)

Seq: QVDN02000015.1 Pseudomonas aeruginosa strain PABL027 NODE_15_length_84320_cov_77.4474, whole genome shotgun sequence (84320 bp)
Overview 1 RT 1: 79410-84089 bp Neighborhood of RT #1 [79410, 84193] TIGR02646 COG4127 RVT-UG5 nitrilase Feature: gene Location: 79410-80288 bp Feature: domain Description: TIGR02646 Location: 79623-80076 bp Feature: domain Description: TIGR02 646 Location: 7962 3-80076 bp Feature: gene Location: 80351-81343 bp Feature: domain Description: COG4127 Location: 80357-81332 bp Feature: domain Description: COG412 7 Location: 80357-81332 bp Feature: gene Location: 81713-84193 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 81716-82145 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 81716-82 145 bp Feature: domain Description: nitrilase Location: 83507-84089 bp Feature: domain Description: nitrilase Location: 83507-84089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG4127 (Predicted restriction endonuclease, Mrr-cat superfamily ), RVT-UG5, nitrilase (cl11424)

Seq: QVDN02000002.1 Pseudomonas aeruginosa strain PABL027 NODE_2_length_206905_cov_75.8952, whole genome shotgun sequence (206905 bp)
Overview 1 RT 1: 107201-118448 bp 2 RT 2: 134707-143529 bp Neighborhood of RT #1 [107201, 118450] NERD zf-C4_Topoisom COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [134707, 143558] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 107201-107971 bp Feature: domain Description: NERD Location: 107300-107633 bp Feature: domain Description: NERD Location: 1073 00-10763 3 bp Feature: domain Description: zf-C4_Topoisom Location: 107852-107966 bp Feature: domain Description: zf-C4_Topoisom Location: 107852-107966 bp Feature: gene Location: 108143-109264 bp Feature: domain Description: COG3177 Location: 108161-109253 bp Feature: domain Description: COG3 177 Location: 108161-109253 bp Feature: gene Location: 109987-111672 bp Feature: domain Description: RVT_N Location: 110044-110284 bp Feature: domain Description: RVT_N Location: 110044-110284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110332-110968 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1103 3 2-110968 bp Feature: domain Description: GIIM Note: maturase Location: 111022-111253 bp Feature: domain Description: GIIM Note: maturase Location: 111022-111253 bp Feature: domain Description: HNH Note: nucleases Location: 111505-111643 bp Feature: domain Description: HNH Note: nucleases Location: 111505-111643 bp Feature: gene Location: 112753-116490 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 112861-113518 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 112861-113 518 bp Feature: domain Description: PRK09776 Location: 113731-114202 bp Feature: domain Description: PRK09776 Location: 113 73 1-114202 bp Feature: domain Description: PAS Location: 114259-114784 bp Feature: domain Description: PAS Location: 114259-114784 bp Feature: domain Description: PRK10060 Location: 114796-116440 bp Feature: domain Description: PRK10060 Location: 114796-116440 bp Feature: gene Location: 116597-118450 bp Feature: domain Description: PRK05658 Location: 116609-118448 bp Feature: domain Description: PRK05658 Location: 116609-118448 bp Feature: gene Location: 134707-135921 bp Feature: domain Description: PRK10770 Location: 134719-135913 bp Feature: domain Description: PRK10770 Location: 13 4719-13 5913 bp Feature: gene Location: 135980-138754 bp Feature: domain Description: LptD Location: 136175-138740 bp Feature: domain Description: LptD Location: 13 6175-13 8740 bp Feature: gene Location: 138887-140599 bp Feature: domain Description: RVT_N Location: 138944-139187 bp Feature: domain Description: RVT_N Location: 13 8944-13 9187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 139232-139868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 13 923 2-13 9868 bp Feature: domain Description: YkfC Location: 140078-140228 bp Feature: domain Description: YkfC Location: 140078-140228 bp Feature: domain Description: HNH Note: nucleases Location: 140405-140543 bp Feature: domain Description: HNH Note: nucleases Location: 140405-140543 bp Feature: gene Location: 141871-142887 bp Feature: domain Description: COG3178 Location: 141874-142873 bp Feature: domain Description: COG3 178 Location: 141874-142873 bp Feature: gene Location: 142884-143558 bp Feature: domain Description: NTP_transferase_like_1 Location: 142890-143529 bp Feature: domain Description: NTP_transferase_like_1 Location: 142890-143 529 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), zf-C4_Topoisom (pfam01396), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)