myRT

myRT report for GCA_003411445.2_ASM341144v2

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Seq: QVCY02000013.1 Pseudomonas aeruginosa strain PABL044 NODE_13_length_89373_cov_51.2844, whole genome shotgun sequence (89373 bp)
Overview 1 RT 1: 20553-26139 bp Neighborhood of RT #1 [20553, 26139] HDOD YgfZ RVT-GII YkfC HNH SdhE Feature: gene Location: 20553-21389 bp Feature: domain Description: HDOD Location: 20556-21384 bp Feature: domain Description: HDOD Location: 20556-21 384 bp Feature: gene Location: 21490-22434 bp Feature: domain Description: YgfZ Location: 21499-22399 bp Feature: domain Description: YgfZ Location: 21 499-22399 bp Feature: gene Location: 24157-25476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 24160-24736 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 241 60-24736 bp Feature: domain Description: YkfC Location: 24934-25090 bp Feature: domain Description: YkfC Location: 24934-25090 bp Feature: domain Description: HNH Note: nucleases Location: 25273-25411 bp Feature: domain Description: HNH Note: nucleases Location: 25273-2541 1 bp Feature: gene Location: 25552-25806 bp Feature: domain Description: SdhE Location: 25558-25798 bp Feature: domain Description: SdhE Location: 25558-25798 bp Feature: gene Location: 25945-26139 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII, YkfC (COG3344), HNH (pfam01844), SdhE (COG2938)

Seq: QVCY02000141.1 Pseudomonas aeruginosa strain PABL044 NODE_141_length_13884_cov_66.2412, whole genome shotgun sequence (13884 bp)
Overview 1 RT 1: 10927-13881 bp Neighborhood of RT #1 [10927, 13881] RVT-GII GIIM Feature: gene Location: 10927-11106 bp Feature: gene Location: 11290-11688 bp Feature: gene Location: 11838-13106 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12051-12708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 051-12 708 bp Feature: domain Description: GIIM Note: maturase Location: 12786-13008 bp Feature: domain Description: GIIM Note: maturase Location: 12 786-13008 bp Feature: gene Location: 13669-13881 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QVCY02000062.1 Pseudomonas aeruginosa strain PABL044 NODE_62_length_35978_cov_73.2159, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-29466 bp Feature: domain Description: YeeA Location: 28552-29332 bp Feature: domain Description: YeeA Location: 28552-293 3 2 bp Feature: gene Location: 29463-32483 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-3 0429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 3 3 109-3 3 178 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 3 3 652-3 3 982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: QVCY02000006.1 Pseudomonas aeruginosa strain PABL044 NODE_6_length_127707_cov_59.8771, whole genome shotgun sequence (127707 bp)
Overview 1 RT 1: 49273-58114 bp 2 RT 2: 74378-88299 bp Neighborhood of RT #1 [49273, 58122] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74378, 88454] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 IMPa_N_2 IMPa_helical Peptidase_M60 Feature: gene Location: 49273-49947 bp Feature: domain Description: NTP_transferase_like_1 Location: 49279-49918 bp Feature: domain Description: NTP_transferase_like_1 Location: 4 9279-4 9918 bp Feature: gene Location: 49944-50960 bp Feature: domain Description: COG3178 Location: 49947-50946 bp Feature: domain Description: COG3178 Location: 4 994 7-5094 6 bp Feature: gene Location: 52233-53945 bp Feature: domain Description: RVT_N Location: 52290-52533 bp Feature: domain Description: RVT_N Location: 52290-52533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52578-53214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52578-53214 bp Feature: domain Description: YkfC Location: 53424-53574 bp Feature: domain Description: YkfC Location: 534 24 -53574 bp Feature: domain Description: HNH Note: nucleases Location: 53751-53889 bp Feature: domain Description: HNH Note: nucleases Location: 53751-53889 bp Feature: gene Location: 54078-56849 bp Feature: domain Description: LptD Location: 54273-56835 bp Feature: domain Description: LptD Location: 54 273-56835 bp Feature: gene Location: 56908-58122 bp Feature: domain Description: PRK10770 Location: 56920-58114 bp Feature: domain Description: PRK10770 Location: 56920-58114 bp Feature: gene Location: 74378-76231 bp Feature: domain Description: PRK05658 Location: 74390-76229 bp Feature: domain Description: PRK05658 Location: 74 390-76229 bp Feature: gene Location: 76338-80075 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76446-77103 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 764 4 6-77103 bp Feature: domain Description: PRK09776 Location: 77316-77787 bp Feature: domain Description: PRK09776 Location: 77316-77787 bp Feature: domain Description: PAS Location: 77844-78369 bp Feature: domain Description: PAS Location: 7784 4 -78369 bp Feature: domain Description: PRK10060 Location: 78381-80025 bp Feature: domain Description: PRK10060 Location: 78381-80025 bp Feature: gene Location: 81156-82841 bp Feature: domain Description: RVT_N Location: 81213-81453 bp Feature: domain Description: RVT_N Location: 81213-814 53 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81501-82137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81501-82137 bp Feature: domain Description: GIIM Note: maturase Location: 82191-82422 bp Feature: domain Description: GIIM Note: maturase Location: 82191-824 22 bp Feature: domain Description: HNH Note: nucleases Location: 82674-82812 bp Feature: domain Description: HNH Note: nucleases Location: 82674 -82812 bp Feature: gene Location: 83564-84685 bp Feature: domain Description: COG3177 Location: 83582-84674 bp Feature: domain Description: COG3177 Location: 83582-84 674 bp Feature: gene Location: 85728-88454 bp Feature: domain Description: IMPa_N_2 Location: 85935-86517 bp Feature: domain Description: IMPa_N_2 Location: 85935-86517 bp Feature: domain Description: IMPa_helical Location: 86598-86925 bp Feature: domain Description: IMPa_helical Location: 86598-86925 bp Feature: domain Description: Peptidase_M60 Location: 87369-88299 bp Feature: domain Description: Peptidase_M60 Location: 87369-88299 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein ), IMPa_N_2 (pfam18650), IMPa_helical (pfam18642), Peptidase_M60 (pfam13402)