myRT

myRT report for GCA_003411465.1_ASM341146v1

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Seq: QVDB01000007.1 Pseudomonas aeruginosa strain PABL041 NODE_7_length_152674_cov_64.2065, whole genome shotgun sequence (152674 bp)
Overview 1 RT 1: 58316-69049 bp Neighborhood of RT #1 [58316, 69051] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 58316-58651 bp Feature: domain Description: NERD Location: 58415-58586 bp Feature: domain Description: NERD Location: 5841 5-58586 bp Feature: gene Location: 58744-59865 bp Feature: domain Description: COG3177 Location: 58762-59854 bp Feature: domain Description: COG31 77 Location: 58762-59854 bp Feature: gene Location: 60588-62273 bp Feature: RT Description: RVT_N Location: 60645-60885 bp Feature: RT Description: RVT_N Location: 60645-60885 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60933-61569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 60933-61 569 bp Feature: domain Description: GIIM Note: maturase Location: 61623-61854 bp Feature: domain Description: GIIM Note: maturase Location: 61 623-61 854 bp Feature: domain Description: HNH Note: nucleases Location: 62106-62244 bp Feature: domain Description: HNH Note: nucleases Location: 621 06-62244 bp Feature: gene Location: 63354-67091 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 63462-64119 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 63462-641 1 9 bp Feature: domain Description: PRK09776 Location: 64332-64803 bp Feature: domain Description: PRK09776 Location: 64332-64803 bp Feature: domain Description: PAS Location: 64848-65385 bp Feature: domain Description: PAS Location: 64848-65385 bp Feature: domain Description: PRK10060 Location: 65394-67041 bp Feature: domain Description: PRK1 0060 Location: 65394-67041 bp Feature: gene Location: 67198-69051 bp Feature: domain Description: PRK05658 Location: 67210-69049 bp Feature: domain Description: PRK05658 Location: 6721 0-69049 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)