myRT

myRT report for GCA_003411505.2_ASM341150v2

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Seq: QVCZ02000059.1 Pseudomonas aeruginosa strain PABL043 NODE_59_length_37310_cov_92.4669, whole genome shotgun sequence (37310 bp)
Overview 1 RT 1: 30442-36496 bp Neighborhood of RT #1 [30442, 36660] AdoMet_MTases DEXHc_Snf RVT_N RVT-GII GIIM HNHc DEXHc_Snf SF2_C_SNF Feature: gene Location: 30442-31887 bp Feature: domain Description: AdoMet_MTases Location: 30565-30931 bp Feature: domain Description: AdoMet_MTases Location: 30565-30931 bp Feature: gene Location: 31987-33018 bp Feature: domain Description: DEXHc_Snf Location: 32185-32431 bp Feature: domain Description: DEXHc_Snf Location: 321 85-32431 bp Feature: gene Location: 33615-35333 bp Feature: RT Description: RVT_N Location: 33672-33909 bp Feature: RT Description: RVT_N Location: 33672-33909 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33960-34611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33960-3461 1 bp Feature: domain Description: GIIM Note: maturase Location: 34665-34896 bp Feature: domain Description: GIIM Note: maturase Location: 34665-34896 bp Feature: domain Description: HNHc Note: nucleases Location: 35130-35286 bp Feature: domain Description: HNHc Note: nucleases Location: 351 30-35286 bp Feature: gene Location: 35401-36660 bp Feature: domain Description: DEXHc_Snf Location: 35434-35590 bp Feature: domain Description: DEXHc_Snf Location: 35434-35590 bp Feature: domain Description: SF2_C_SNF Location: 36118-36496 bp Feature: domain Description: SF2_C_SNF Location: 361 1 8-36496 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT AdoMet_MTases (cl17173), DEXHc_Snf (cd17919), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), SF2_C_SNF (cd18793)

Seq: QVCZ02000006.1 Pseudomonas aeruginosa strain PABL043 NODE_6_length_142277_cov_80.9059, whole genome shotgun sequence (142277 bp)
Overview 1 RT 1: 60927-69783 bp 2 RT 2: 86044-96331 bp Neighborhood of RT #1 [60927, 69791] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [86044, 96342] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 60927-61601 bp Feature: domain Description: NTP_transferase_like_1 Location: 60933-61572 bp Feature: domain Description: NTP_transferase_like_1 Location: 60933-61572 bp Feature: gene Location: 61598-62614 bp Feature: domain Description: COG3178 Location: 61601-62600 bp Feature: domain Description: COG3178 Location: 61601-62 600 bp Feature: gene Location: 63887-65599 bp Feature: RT Description: RVT_N Location: 63944-64187 bp Feature: RT Description: RVT_N Location: 63944-64187 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64232-64868 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 642 32 -64868 bp Feature: domain Description: YkfC Location: 65078-65228 bp Feature: domain Description: YkfC Location: 65078-652 2 8 bp Feature: domain Description: HNH Note: nucleases Location: 65405-65543 bp Feature: domain Description: HNH Note: nucleases Location: 65405-65543 bp Feature: gene Location: 65732-68518 bp Feature: domain Description: LptD Location: 66077-68504 bp Feature: domain Description: LptD Location: 66077-68504 bp Feature: gene Location: 68577-69791 bp Feature: domain Description: PRK10770 Location: 68589-69783 bp Feature: domain Description: PRK10770 Location: 68589-69783 bp Feature: gene Location: 86044-87897 bp Feature: domain Description: PRK05658 Location: 86056-87895 bp Feature: domain Description: PRK05658 Location: 86056-87895 bp Feature: gene Location: 88004-91741 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88112-88769 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 88112 -88769 bp Feature: domain Description: PRK09776 Location: 88982-89456 bp Feature: domain Description: PRK09776 Location: 88982 -89456 bp Feature: domain Description: PAS Location: 89507-90041 bp Feature: domain Description: PAS Location: 89507-90041 bp Feature: domain Description: PRK10060 Location: 90044-91691 bp Feature: domain Description: PRK10060 Location: 90044-91691 bp Feature: gene Location: 92822-94507 bp Feature: RT Description: RVT_N Location: 92879-93119 bp Feature: RT Description: RVT_N Location: 92 879-93119 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93167-93803 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93167-93803 bp Feature: domain Description: GIIM Note: maturase Location: 93857-94088 bp Feature: domain Description: GIIM Note: maturase Location: 93857-94088 bp Feature: domain Description: HNH Note: nucleases Location: 94340-94478 bp Feature: domain Description: HNH Note: nucleases Location: 94340-94478 bp Feature: gene Location: 94810-94959 bp Feature: gene Location: 95221-96342 bp Feature: domain Description: COG3177 Location: 95239-96331 bp Feature: domain Description: COG3177 Location: 952 39-96331 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )