myRT

myRT report for GCA_003411565.1_ASM341156v1

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Seq: QVCG01000001.1 Pseudomonas aeruginosa strain PABL063 NODE_1_length_250497_cov_61.4333, whole genome shotgun sequence (250497 bp)
Overview 1 RT 1: 165880-176070 bp 2 RT 2: 192329-201179 bp Neighborhood of RT #1 [165880, 176072] RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [192329, 201208] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 165880-166122 bp Feature: gene Location: 166394-167071 bp Feature: gene Location: 167609-169294 bp Feature: RT Description: RVT_N Location: 167666-167906 bp Feature: RT Description: RVT_N Location: 1 67666-1 67906 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 167954-168590 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 67954-1 68590 bp Feature: domain Description: GIIM Note: maturase Location: 168644-168875 bp Feature: domain Description: GIIM Note: maturase Location: 1 68644-1 68875 bp Feature: domain Description: HNH Note: nucleases Location: 169127-169265 bp Feature: domain Description: HNH Note: nucleases Location: 1 691 27-1 69265 bp Feature: gene Location: 170375-174112 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 170483-171140 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 1 70483-1 71 1 40 bp Feature: domain Description: PRK09776 Location: 171353-171824 bp Feature: domain Description: PRK09776 Location: 1 71 353-1 71 824 bp Feature: domain Description: PAS Location: 171884-172406 bp Feature: domain Description: PAS Location: 1 71 884-1 72406 bp Feature: domain Description: PRK10060 Location: 172415-174062 bp Feature: domain Description: PRK1 0060 Location: 1 7241 5-1 74062 bp Feature: gene Location: 174219-176072 bp Feature: domain Description: PRK05658 Location: 174231-176070 bp Feature: domain Description: PRK05658 Location: 1 74231 -1 76070 bp Feature: gene Location: 192329-193543 bp Feature: domain Description: PRK10770 Location: 192341-193535 bp Feature: domain Description: PRK1 0770 Location: 1 92341 -1 93535 bp Feature: gene Location: 193602-196403 bp Feature: domain Description: LptD Location: 193797-196389 bp Feature: domain Description: LptD Location: 1 93797-1 96389 bp Feature: gene Location: 196536-198248 bp Feature: RT Description: RVT_N Location: 196593-196836 bp Feature: RT Description: RVT_N Location: 1 96593-1 96836 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 196881-197517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 96881 -1 9751 7 bp Feature: domain Description: YkfC Location: 197727-197877 bp Feature: domain Description: YkfC Location: 1 97727-1 97877 bp Feature: domain Description: HNH Note: nucleases Location: 198054-198192 bp Feature: domain Description: HNH Note: nucleases Location: 1 98054-1 981 92 bp Feature: gene Location: 199521-200537 bp Feature: domain Description: COG3178 Location: 199524-200523 bp Feature: domain Description: COG31 78 Location: 1 99524-200523 bp Feature: gene Location: 200534-201208 bp Feature: domain Description: NTP_transferase_like_1 Location: 200540-201179 bp Feature: domain Description: NTP_transferase_like_1 Location: 200540-201 1 79 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional)
LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)