myRT

myRT report for GCA_003411595.2_ASM341159v2

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Seq: QVCP02000108.1 Pseudomonas aeruginosa strain PABL054 NODE_108_length_13890_cov_29.4485, whole genome shotgun sequence (13890 bp)
Overview 1 RT 1: 1-2958 bp Neighborhood of RT #1 [1, 2958] RVT-GII GIIM Feature: gene Location: 1-216 bp Feature: gene Location: 779-2047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1 649 bp Feature: domain Description: GIIM Note: maturase Location: 1727-1949 bp Feature: domain Description: GIIM Note: maturase Location: 1 727-1 949 bp Feature: gene Location: 2197-2595 bp Feature: gene Location: 2779-2958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QVCP02000021.1 Pseudomonas aeruginosa strain PABL054 NODE_21_length_94952_cov_27.4304, whole genome shotgun sequence (94952 bp)
Overview 1 RT 1: 93114-94710 bp Neighborhood of RT #1 [93114, 94775] SdhE RVT-GII GIIM HNH Feature: gene Location: 93114-93308 bp Feature: gene Location: 93447-93701 bp Feature: domain Description: SdhE Location: 93453-93693 bp Feature: domain Description: SdhE Location: 93453-93693 bp Feature: gene Location: 93777-94775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93780-94035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93780-94035 bp Feature: domain Description: GIIM Note: maturase Location: 94086-94320 bp Feature: domain Description: GIIM Note: maturase Location: 94086-9432 0 bp Feature: domain Description: HNH Note: nucleases Location: 94572-94710 bp Feature: domain Description: HNH Note: nucleases Location: 94572 -94710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: QVCP02000041.1 Pseudomonas aeruginosa strain PABL054 NODE_41_length_52811_cov_27.5214, whole genome shotgun sequence (52811 bp)
Overview 1 RT 1: 48946-52757 bp Neighborhood of RT #1 [48946, 52798] HDOD YgfZ RVT-GII Feature: gene Location: 48946-49782 bp Feature: domain Description: HDOD Location: 48949-49777 bp Feature: domain Description: HDOD Location: 48949-49777 bp Feature: gene Location: 49883-50827 bp Feature: domain Description: YgfZ Location: 49892-50792 bp Feature: domain Description: YgfZ Location: 49892-50792 bp Feature: gene Location: 52550-52798 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52553-52757 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52553 -52757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII

Seq: QVCP02000066.1 Pseudomonas aeruginosa strain PABL054 NODE_66_length_35977_cov_30.3267, whole genome shotgun sequence (35977 bp)
Overview 1 RT 1: 25810-33981 bp Neighborhood of RT #1 [25810, 34175] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: gene Location: 27685-28794 bp Feature: domain Description: YeeA Location: 27880-28660 bp Feature: domain Description: YeeA Location: 27880-28660 bp Feature: gene Location: 29462-32482 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29957-30428 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29957-304 28 bp Feature: gene Location: 32479-33036 bp Feature: gene Location: 33036-34175 bp Feature: domain Description: AAA_21 Location: 33108-33177 bp Feature: domain Description: AAA_21 Location: 33108-33177 bp Feature: domain Description: AAA_21 Location: 33651-33981 bp Feature: domain Description: AAA_21 Location: 33651-33981 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)

Seq: QVCP02000006.1 Pseudomonas aeruginosa strain PABL054 NODE_6_length_171898_cov_27.8445, whole genome shotgun sequence (171898 bp)
Overview 1 RT 1: 49273-58114 bp 2 RT 2: 74378-84302 bp Neighborhood of RT #1 [49273, 58122] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74378, 84385] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH int HTH_XRE Feature: gene Location: 49273-49947 bp Feature: domain Description: NTP_transferase_like_1 Location: 49279-49918 bp Feature: domain Description: NTP_transferase_like_1 Location: 49279-49918 bp Feature: gene Location: 49944-50960 bp Feature: domain Description: COG3178 Location: 49947-50946 bp Feature: domain Description: COG3178 Location: 49947-5 0946 bp Feature: gene Location: 52233-53945 bp Feature: domain Description: RVT_N Location: 52290-52533 bp Feature: domain Description: RVT_N Location: 5 2290-5 25 33 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52578-53214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 25 78-5 3214 bp Feature: domain Description: YkfC Location: 53424-53574 bp Feature: domain Description: YkfC Location: 5 3424-5 35 74 bp Feature: domain Description: HNH Note: nucleases Location: 53751-53889 bp Feature: domain Description: HNH Note: nucleases Location: 5 375 1-5 3889 bp Feature: gene Location: 54078-56849 bp Feature: domain Description: LptD Location: 54273-56835 bp Feature: domain Description: LptD Location: 5 4273-5 6835 bp Feature: gene Location: 56908-58122 bp Feature: domain Description: PRK10770 Location: 56920-58114 bp Feature: domain Description: PRK10770 Location: 5 6920-5 8114 bp Feature: gene Location: 74378-76231 bp Feature: domain Description: PRK05658 Location: 74390-76229 bp Feature: domain Description: PRK05 65 8 Location: 74390-76229 bp Feature: gene Location: 76338-80075 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76446-77103 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76446-77103 bp Feature: domain Description: PRK09776 Location: 77316-77787 bp Feature: domain Description: PRK09776 Location: 77316-77787 bp Feature: domain Description: PAS Location: 77844-78369 bp Feature: domain Description: PAS Location: 77844-78369 bp Feature: domain Description: PRK10060 Location: 78381-80025 bp Feature: domain Description: PRK10060 Location: 78381-80025 bp Feature: gene Location: 81156-82841 bp Feature: domain Description: RVT_N Location: 81213-81453 bp Feature: domain Description: RVT_N Location: 81213-8145 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81501-82137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 815 01-82137 bp Feature: domain Description: GIIM Note: maturase Location: 82191-82422 bp Feature: domain Description: GIIM Note: maturase Location: 82191-82422 bp Feature: domain Description: HNH Note: nucleases Location: 82674-82812 bp Feature: domain Description: HNH Note: nucleases Location: 82674-82812 bp Feature: gene Location: 82972-84141 bp Feature: domain Description: int Location: 82975-83992 bp Feature: domain Description: int Location: 82975 -83992 bp Feature: gene Location: 84146-84385 bp Feature: domain Description: HTH_XRE Location: 84158-84302 bp Feature: domain Description: HTH_XRE Location: 8415 8-84302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), int (PHA02601), HTH_XRE (smart00530)