myRT

myRT report for GCA_003411635.2_ASM341163v2

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Seq: QVCQ02000002.1 Pseudomonas aeruginosa strain PABL053 NODE_2_length_238954_cov_64.3974, whole genome shotgun sequence (238954 bp)
Overview 1 RT 1: 71435-82106 bp Neighborhood of RT #1 [71435, 82171] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 NERD Feature: gene Location: 71435-73288 bp Feature: domain Description: PRK05658 Location: 71447-73286 bp Feature: domain Description: PRK05658 Location: 71 447-73286 bp Feature: gene Location: 73395-77132 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73503-74160 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 73503-741 60 bp Feature: domain Description: PRK09776 Location: 74373-74844 bp Feature: domain Description: PRK09776 Location: 74373-74844 bp Feature: domain Description: PAS Location: 74904-75426 bp Feature: domain Description: PAS Location: 74904-75426 bp Feature: domain Description: PRK10060 Location: 75435-77082 bp Feature: domain Description: PRK1 0060 Location: 75435-77082 bp Feature: gene Location: 78213-79898 bp Feature: RT Description: RVT_N Location: 78270-78510 bp Feature: RT Description: RVT_N Location: 78270-7851 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78558-79194 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78558-791 94 bp Feature: domain Description: GIIM Note: maturase Location: 79248-79479 bp Feature: domain Description: GIIM Note: maturase Location: 79248-79479 bp Feature: domain Description: HNH Note: nucleases Location: 79731-79869 bp Feature: domain Description: HNH Note: nucleases Location: 79731 -79869 bp Feature: gene Location: 80622-81743 bp Feature: domain Description: COG3177 Location: 80640-81732 bp Feature: domain Description: COG31 77 Location: 80640-81 732 bp Feature: gene Location: 81836-82171 bp Feature: domain Description: NERD Location: 81935-82106 bp Feature: domain Description: NERD Location: 81 935-821 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), COG3177 (Fic family protein )
NERD (pfam08378)