myRT

myRT report for GCA_003411745.1_ASM341174v1

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Seq: QVCT01000002.1 Pseudomonas aeruginosa strain PABL049 NODE_2_length_313681_cov_59.9194, whole genome shotgun sequence (313681 bp)
Overview 1 RT 1: 39704-48548 bp 2 RT 2: 64813-75110 bp Neighborhood of RT #1 [39704, 48556] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [64813, 75121] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 39704-40378 bp Feature: domain Description: NTP_transferase_like_1 Location: 39710-40349 bp Feature: domain Description: NTP_transferase_like_1 Location: 3971 0-40349 bp Feature: gene Location: 40375-41391 bp Feature: domain Description: COG3178 Location: 40378-41377 bp Feature: domain Description: COG31 78 Location: 40378-41 377 bp Feature: gene Location: 42664-44376 bp Feature: RT Description: RVT_N Location: 42721-42964 bp Feature: RT Description: RVT_N Location: 42721 -42964 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43009-43645 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 43009-43645 bp Feature: domain Description: YkfC Location: 43855-44005 bp Feature: domain Description: YkfC Location: 43855-44005 bp Feature: domain Description: HNH Note: nucleases Location: 44182-44320 bp Feature: domain Description: HNH Note: nucleases Location: 441 82-44320 bp Feature: gene Location: 44509-47283 bp Feature: domain Description: LptD Location: 44704-47269 bp Feature: domain Description: LptD Location: 44704-47269 bp Feature: gene Location: 47342-48556 bp Feature: domain Description: PRK10770 Location: 47354-48548 bp Feature: domain Description: PRK1 0770 Location: 47354-48548 bp Feature: gene Location: 64813-66666 bp Feature: domain Description: PRK05658 Location: 64825-66664 bp Feature: domain Description: PRK05658 Location: 64825-66664 bp Feature: gene Location: 66773-70510 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 66881-67538 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 66881 -67538 bp Feature: domain Description: PRK09776 Location: 67751-68222 bp Feature: domain Description: PRK09776 Location: 67751 -68222 bp Feature: domain Description: PAS Location: 68294-68804 bp Feature: domain Description: PAS Location: 68294-68804 bp Feature: domain Description: PRK10060 Location: 68813-70460 bp Feature: domain Description: PRK1 0060 Location: 6881 3-70460 bp Feature: gene Location: 71591-73276 bp Feature: RT Description: RVT_N Location: 71648-71888 bp Feature: RT Description: RVT_N Location: 71 648-71 888 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71936-72572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 936-72572 bp Feature: domain Description: GIIM Note: maturase Location: 72626-72857 bp Feature: domain Description: GIIM Note: maturase Location: 72626-72857 bp Feature: domain Description: HNH Note: nucleases Location: 73109-73247 bp Feature: domain Description: HNH Note: nucleases Location: 731 09-73247 bp Feature: gene Location: 73604-73741 bp Feature: gene Location: 74000-75121 bp Feature: domain Description: COG3177 Location: 74018-75110 bp Feature: domain Description: COG31 77 Location: 7401 8-751 1 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )