myRT

myRT report for GCA_003411745.2_ASM341174v2

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Seq: QVCT02000002.1 Pseudomonas aeruginosa strain PABL049 NODE_2_length_313624_cov_64.231, whole genome shotgun sequence (313624 bp)
Overview 1 RT 1: 39647-48491 bp 2 RT 2: 64756-75053 bp Neighborhood of RT #1 [39647, 48499] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [64756, 75064] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 39647-40321 bp Feature: domain Description: NTP_transferase_like_1 Location: 39653-40292 bp Feature: domain Description: NTP_transferase_like_1 Location: 39653-40292 bp Feature: gene Location: 40318-41334 bp Feature: domain Description: COG3178 Location: 40321-41320 bp Feature: domain Description: COG31 78 Location: 40321 -41 320 bp Feature: gene Location: 42607-44319 bp Feature: RT Description: RVT_N Location: 42664-42907 bp Feature: RT Description: RVT_N Location: 42664-42907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42952-43588 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42952-43588 bp Feature: domain Description: YkfC Location: 43798-43948 bp Feature: domain Description: YkfC Location: 43798-43948 bp Feature: domain Description: HNH Note: nucleases Location: 44125-44263 bp Feature: domain Description: HNH Note: nucleases Location: 441 25-44263 bp Feature: gene Location: 44452-47226 bp Feature: domain Description: LptD Location: 44647-47212 bp Feature: domain Description: LptD Location: 44647-4721 2 bp Feature: gene Location: 47285-48499 bp Feature: domain Description: PRK10770 Location: 47297-48491 bp Feature: domain Description: PRK1 0770 Location: 47297-48491 bp Feature: gene Location: 64756-66609 bp Feature: domain Description: PRK05658 Location: 64768-66607 bp Feature: domain Description: PRK05658 Location: 64768-66607 bp Feature: gene Location: 66716-70453 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 66824-67481 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 66824-67481 bp Feature: domain Description: PRK09776 Location: 67694-68165 bp Feature: domain Description: PRK09776 Location: 67694-681 65 bp Feature: domain Description: PAS Location: 68237-68747 bp Feature: domain Description: PAS Location: 68237-68747 bp Feature: domain Description: PRK10060 Location: 68756-70403 bp Feature: domain Description: PRK1 0060 Location: 68756-70403 bp Feature: gene Location: 71534-73219 bp Feature: RT Description: RVT_N Location: 71591-71831 bp Feature: RT Description: RVT_N Location: 71 591 -71 831 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71879-72515 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 879-7251 5 bp Feature: domain Description: GIIM Note: maturase Location: 72569-72800 bp Feature: domain Description: GIIM Note: maturase Location: 72569-72800 bp Feature: domain Description: HNH Note: nucleases Location: 73052-73190 bp Feature: domain Description: HNH Note: nucleases Location: 73052-731 90 bp Feature: gene Location: 73547-73684 bp Feature: gene Location: 73943-75064 bp Feature: domain Description: COG3177 Location: 73961-75053 bp Feature: domain Description: COG31 77 Location: 73961 -75053 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )