myRT

myRT report for GCA_003411875.1_ASM341187v1

Download annotations/find similar RTs

Seq: QVDE01000013.1 Pseudomonas aeruginosa strain PABL037 NODE_13_length_167820_cov_101.424, whole genome shotgun sequence (167820 bp)
Overview 1 RT 1: 1-2958 bp Neighborhood of RT #1 [1, 2958] RVT-GII GIIM Feature: gene Location: 1-243 bp Feature: gene Location: 779-2047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1 649 bp Feature: domain Description: GIIM Note: maturase Location: 1727-1949 bp Feature: domain Description: GIIM Note: maturase Location: 1 727-1 949 bp Feature: gene Location: 2197-2595 bp Feature: gene Location: 2779-2958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QVDE01000020.1 Pseudomonas aeruginosa strain PABL037 NODE_20_length_119220_cov_103.245, whole genome shotgun sequence (119220 bp)
Overview 1 RT 1: 115355-119166 bp Neighborhood of RT #1 [115355, 119207] HDOD YgfZ RVT-GII Feature: gene Location: 115355-116191 bp Feature: domain Description: HDOD Location: 115358-116186 bp Feature: domain Description: HDOD Location: 115358-116186 bp Feature: gene Location: 116292-117236 bp Feature: domain Description: YgfZ Location: 116301-117201 bp Feature: domain Description: YgfZ Location: 116301-1172 01 bp Feature: gene Location: 118959-119207 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118962-119166 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118962 -119166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HDOD (pfam08668), YgfZ (COG0354), RVT-GII

Seq: QVDE01000025.1 Pseudomonas aeruginosa strain PABL037 NODE_25_length_94952_cov_101.232, whole genome shotgun sequence (94952 bp)
Overview 1 RT 1: 93114-94710 bp Neighborhood of RT #1 [93114, 94775] SdhE RVT-GII GIIM HNH Feature: gene Location: 93114-93308 bp Feature: gene Location: 93447-93701 bp Feature: domain Description: SdhE Location: 93453-93693 bp Feature: domain Description: SdhE Location: 93 453 -93 693 bp Feature: gene Location: 93777-94775 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93780-94035 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93 780-9403 5 bp Feature: domain Description: GIIM Note: maturase Location: 94086-94320 bp Feature: domain Description: GIIM Note: maturase Location: 94086-943 20 bp Feature: domain Description: HNH Note: nucleases Location: 94572-94710 bp Feature: domain Description: HNH Note: nucleases Location: 94572-94710 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SdhE (COG2938), RVT-GII, GIIM (pfam08388), HNH (pfam01844)

Seq: QVDE01000002.1 Pseudomonas aeruginosa strain PABL037 NODE_2_length_406782_cov_101.53, whole genome shotgun sequence (406782 bp)
Overview 1 RT 1: 49273-58114 bp 2 RT 2: 74378-84302 bp Neighborhood of RT #1 [49273, 58122] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74378, 84385] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH int HTH_XRE Feature: gene Location: 49273-49947 bp Feature: domain Description: NTP_transferase_like_1 Location: 49279-49918 bp Feature: domain Description: NTP_transferase_like_1 Location: 4 9279-4 9918 bp Feature: gene Location: 49944-50960 bp Feature: domain Description: COG3178 Location: 49947-50946 bp Feature: domain Description: COG3178 Location: 4 994 7-5094 6 bp Feature: gene Location: 52233-53945 bp Feature: domain Description: RVT_N Location: 52290-52533 bp Feature: domain Description: RVT_N Location: 52290-52533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52578-53214 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52578-53214 bp Feature: domain Description: YkfC Location: 53424-53574 bp Feature: domain Description: YkfC Location: 534 24 -53574 bp Feature: domain Description: HNH Note: nucleases Location: 53751-53889 bp Feature: domain Description: HNH Note: nucleases Location: 53751-53889 bp Feature: gene Location: 54078-56849 bp Feature: domain Description: LptD Location: 54273-56835 bp Feature: domain Description: LptD Location: 54 273-56835 bp Feature: gene Location: 56908-58122 bp Feature: domain Description: PRK10770 Location: 56920-58114 bp Feature: domain Description: PRK10770 Location: 56920-58114 bp Feature: gene Location: 74378-76231 bp Feature: domain Description: PRK05658 Location: 74390-76229 bp Feature: domain Description: PRK05658 Location: 74 390-76229 bp Feature: gene Location: 76338-80075 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76446-77103 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 764 4 6-77103 bp Feature: domain Description: PRK09776 Location: 77316-77787 bp Feature: domain Description: PRK09776 Location: 77316-77787 bp Feature: domain Description: PAS Location: 77844-78369 bp Feature: domain Description: PAS Location: 7784 4 -78369 bp Feature: domain Description: PRK10060 Location: 78381-80025 bp Feature: domain Description: PRK10060 Location: 78381-80025 bp Feature: gene Location: 81156-82841 bp Feature: domain Description: RVT_N Location: 81213-81453 bp Feature: domain Description: RVT_N Location: 81213-814 53 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81501-82137 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81501-82137 bp Feature: domain Description: GIIM Note: maturase Location: 82191-82422 bp Feature: domain Description: GIIM Note: maturase Location: 82191-824 22 bp Feature: domain Description: HNH Note: nucleases Location: 82674-82812 bp Feature: domain Description: HNH Note: nucleases Location: 82674 -82812 bp Feature: gene Location: 82972-84141 bp Feature: domain Description: int Location: 82975-83992 bp Feature: domain Description: int Location: 82975-83992 bp Feature: gene Location: 84146-84385 bp Feature: domain Description: HTH_XRE Location: 84158-84302 bp Feature: domain Description: HTH_XRE Location: 84 158-84 302 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), int (PHA02601), HTH_XRE (smart00530)

Seq: QVDE01000047.1 Pseudomonas aeruginosa strain PABL037 NODE_47_length_35978_cov_139.85, whole genome shotgun sequence (35978 bp)
Overview 1 RT 1: 25810-33982 bp Neighborhood of RT #1 [25810, 34176] DUF262 YeeA RVT-UG5 AAA_21 AAA_21 Feature: gene Location: 25810-27681 bp Feature: domain Description: DUF262 Location: 25858-26626 bp Feature: domain Description: DUF262 Location: 25 85 8-26626 bp Feature: gene Location: 27685-29466 bp Feature: domain Description: YeeA Location: 28552-29332 bp Feature: domain Description: YeeA Location: 285 5 2-29332 bp Feature: gene Location: 29463-32483 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 29958-30429 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2995 8-30429 bp Feature: gene Location: 32480-33037 bp Feature: gene Location: 33037-34176 bp Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 33109-33178 bp Feature: domain Description: AAA_21 Location: 33652-33982 bp Feature: domain Description: AAA_21 Location: 3365 2-33982 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF262 (pfam03235), YeeA (COG1002), RVT-UG5, AAA_21 (pfam13304)