myRT

myRT report for GCA_003411885.1_ASM341188v1

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Seq: QVDF01000026.1 Pseudomonas aeruginosa strain PABL036 NODE_26_length_82652_cov_87.2848, whole genome shotgun sequence (82652 bp)
Overview 1 RT 1: 540-11232 bp Neighborhood of RT #1 [540, 11234] INT_Rci_Hp1_C RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 540-1298 bp Feature: gene Location: 1375-2469 bp Feature: domain Description: INT_Rci_Hp1_C Location: 1885-2386 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 1 885-2386 bp Feature: gene Location: 2771-4456 bp Feature: RT Description: RVT_N Location: 2828-3068 bp Feature: RT Description: RVT_N Location: 2828-3068 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3116-3752 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 6-3752 bp Feature: domain Description: GIIM Note: maturase Location: 3806-4037 bp Feature: domain Description: GIIM Note: maturase Location: 3806-4037 bp Feature: domain Description: HNH Note: nucleases Location: 4289-4427 bp Feature: domain Description: HNH Note: nucleases Location: 4289-4427 bp Feature: gene Location: 5537-9274 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5645-6302 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 5645-6302 bp Feature: domain Description: PRK09776 Location: 6515-6986 bp Feature: domain Description: PRK09776 Location: 651 5-6986 bp Feature: domain Description: PAS Location: 7031-7568 bp Feature: domain Description: PAS Location: 7031 -7568 bp Feature: domain Description: PRK10060 Location: 7577-9224 bp Feature: domain Description: PRK1 0060 Location: 7577-9224 bp Feature: gene Location: 9381-11234 bp Feature: domain Description: PRK05658 Location: 9393-11232 bp Feature: domain Description: PRK05658 Location: 9393-1 1 232 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Rci_Hp1_C (cd00796), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PRK05658 (RNA polymerase sigma factor RpoD; Validated)