myRT

myRT report for GCA_003411895.2_ASM341189v2

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Seq: QVDG02000016.1 Pseudomonas aeruginosa strain PABL035 NODE_16_length_83331_cov_87.2692, whole genome shotgun sequence (83331 bp)
Overview 1 RT 1: 49669-58528 bp 2 RT 2: 74792-83226 bp Neighborhood of RT #1 [49669, 58536] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [74792, 83255] PRK05658 PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 RVT_N RVT-GII GIIM HNH Feature: gene Location: 49669-50343 bp Feature: domain Description: NTP_transferase_like_1 Location: 49675-50314 bp Feature: domain Description: NTP_transferase_like_1 Location: 49675-5031 4 bp Feature: gene Location: 50340-51356 bp Feature: domain Description: COG3178 Location: 50343-51342 bp Feature: domain Description: COG31 78 Location: 50343-51 342 bp Feature: gene Location: 52629-54341 bp Feature: RT Description: RVT_N Location: 52686-52929 bp Feature: RT Description: RVT_N Location: 52686-52929 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52974-53610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52974-5361 0 bp Feature: domain Description: YkfC Location: 53817-53970 bp Feature: domain Description: YkfC Location: 5381 7-53970 bp Feature: domain Description: HNH Note: nucleases Location: 54147-54285 bp Feature: domain Description: HNH Note: nucleases Location: 541 47-54285 bp Feature: gene Location: 54474-57263 bp Feature: domain Description: LptD Location: 54669-57249 bp Feature: domain Description: LptD Location: 54669-57249 bp Feature: gene Location: 57322-58536 bp Feature: domain Description: PRK10770 Location: 57334-58528 bp Feature: domain Description: PRK1 0770 Location: 57334-58528 bp Feature: gene Location: 74792-76645 bp Feature: domain Description: PRK05658 Location: 74804-76643 bp Feature: domain Description: PRK05658 Location: 74804-76643 bp Feature: gene Location: 76752-80489 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76860-77517 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 76860-7751 7 bp Feature: domain Description: PRK09776 Location: 77730-78201 bp Feature: domain Description: PRK09776 Location: 77730-78201 bp Feature: domain Description: PAS Location: 78258-78783 bp Feature: domain Description: PAS Location: 78258-78783 bp Feature: domain Description: PRK10060 Location: 78792-80439 bp Feature: domain Description: PRK1 0060 Location: 78792-80439 bp Feature: gene Location: 81570-83255 bp Feature: RT Description: RVT_N Location: 81627-81867 bp Feature: RT Description: RVT_N Location: 81 627-81 867 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81915-82551 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 81 91 5-82551 bp Feature: domain Description: GIIM Note: maturase Location: 82605-82836 bp Feature: domain Description: GIIM Note: maturase Location: 82605-82836 bp Feature: domain Description: HNH Note: nucleases Location: 83088-83226 bp Feature: domain Description: HNH Note: nucleases Location: 83088-83226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PBP2_BvgS_HisK_like (cd01007)
PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388)

Seq: QVDG02000239.1 Pseudomonas aeruginosa strain PABL035 NODE_240_length_2609_cov_277.7, whole genome shotgun sequence (2609 bp)
Overview 1 RT 1: 3-2414 bp Neighborhood of RT #1 [3, 2414] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 3-164 bp Feature: gene Location: 277-1986 bp Feature: RT Description: RVT_N Location: 340-583 bp Feature: RT Description: RVT_N Location: 340-583 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 628-1264 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 8-12 64 bp Feature: domain Description: GIIM Note: maturase Location: 1318-1549 bp Feature: domain Description: GIIM Note: maturase Location: 1318-1549 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-1939 bp Feature: domain Description: HNHc Note: nucleases Location: 1783-1939 bp Feature: gene Location: 2073-2414 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)