myRT

myRT report for GCA_003411955.1_ASM341195v1

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Seq: QVEB01000324.1 Pseudomonas aeruginosa strain PABL010 NODE_325_length_2418_cov_273.623, whole genome shotgun sequence (2418 bp)
Overview 1 RT 1: 83-2415 bp Neighborhood of RT #1 [83, 2415] RVT_N RVT-GII GIIM HNHc Feature: gene Location: 83-1801 bp Feature: RT Description: RVT_N Location: 140-377 bp Feature: RT Description: RVT_N Location: 1 40-377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-1079 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 428-1 079 bp Feature: domain Description: GIIM Note: maturase Location: 1133-1364 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 33-1 364 bp Feature: domain Description: HNHc Note: nucleases Location: 1598-1754 bp Feature: domain Description: HNHc Note: nucleases Location: 1 598-1 754 bp Feature: gene Location: 2071-2199 bp Feature: gene Location: 2230-2415 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: QVEB01000007.1 Pseudomonas aeruginosa strain PABL010 NODE_7_length_97803_cov_75.108, whole genome shotgun sequence (97803 bp)
Overview 1 RT 1: 61397-70240 bp 2 RT 2: 88464-96804 bp Neighborhood of RT #1 [61397, 70248] NTP_transferase_like_1 COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [88464, 96815] PBP2_BvgS_HisK_like sensory_box sensory_box sensory_box sensory_box PRK10060 RVT_N RVT-GII GIIM HNH COG3177 Feature: gene Location: 61397-62071 bp Feature: domain Description: NTP_transferase_like_1 Location: 61403-62042 bp Feature: domain Description: NTP_transferase_like_1 Location: 61403-62 042 bp Feature: gene Location: 62068-63084 bp Feature: domain Description: COG3178 Location: 62071-63070 bp Feature: domain Description: COG3178 Location: 62 071-63070 bp Feature: gene Location: 64356-66068 bp Feature: RT Description: RVT_N Location: 64413-64656 bp Feature: RT Description: RVT_N Location: 64413-64656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64701-65337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64701-65337 bp Feature: domain Description: YkfC Location: 65547-65697 bp Feature: domain Description: YkfC Location: 65547-65697 bp Feature: domain Description: HNH Note: nucleases Location: 65874-66012 bp Feature: domain Description: HNH Note: nucleases Location: 65874-66012 bp Feature: gene Location: 66201-68975 bp Feature: domain Description: LptD Location: 66396-68961 bp Feature: domain Description: LptD Location: 66396-68961 bp Feature: gene Location: 69034-70248 bp Feature: domain Description: PRK10770 Location: 69046-70240 bp Feature: domain Description: PRK10770 Location: 69046-702 40 bp Feature: gene Location: 88464-90728 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88572-89229 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 88572 -892 2 9 bp Feature: domain Description: sensory_box Location: 89397-89760 bp Feature: domain Description: sensory_box Location: 89397-89760 bp Feature: domain Description: sensory_box Location: 89772-90132 bp Feature: domain Description: sensory_box Location: 89772 -90132 bp Feature: domain Description: sensory_box Location: 90144-90510 bp Feature: domain Description: sensory_box Location: 90144-90510 bp Feature: domain Description: sensory_box Location: 90525-90714 bp Feature: domain Description: sensory_box Location: 9052 5-90714 bp Feature: gene Location: 90987-92201 bp Feature: domain Description: PRK10060 Location: 90993-92151 bp Feature: domain Description: PRK10060 Location: 90993-92 151 bp Feature: gene Location: 93282-94967 bp Feature: RT Description: RVT_N Location: 93339-93579 bp Feature: RT Description: RVT_N Location: 93339-93579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93627-94263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9362 7-942 63 bp Feature: domain Description: GIIM Note: maturase Location: 94317-94548 bp Feature: domain Description: GIIM Note: maturase Location: 94317-94548 bp Feature: domain Description: HNH Note: nucleases Location: 94800-94938 bp Feature: domain Description: HNH Note: nucleases Location: 94800-94938 bp Feature: gene Location: 95295-95432 bp Feature: gene Location: 95694-96815 bp Feature: domain Description: COG3177 Location: 95712-96804 bp Feature: domain Description: COG3177 Location: 95712 -96804 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NTP_transferase_like_1 (cd06422), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PBP2_BvgS_HisK_like (cd01007), sensory_box (TIGR00229)
PRK10060 (cyclic di-GMP phosphodiesterase), GIIM (pfam08388), COG3177 (Fic family protein )