myRT

myRT report for GCA_003412035.2_ASM341203v2

Download annotations/find similar RTs

Seq: QVEE02000005.1 Pseudomonas aeruginosa strain PABL006 NODE_5_length_124874_cov_74.8489, whole genome shotgun sequence (124874 bp)
Overview 1 RT 1: 42704-53438 bp Neighborhood of RT #1 [42704, 53440] NERD COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 42704-43039 bp Feature: domain Description: NERD Location: 42803-42974 bp Feature: domain Description: NERD Location: 42803-42974 bp Feature: gene Location: 43132-44253 bp Feature: domain Description: COG3177 Location: 43150-44242 bp Feature: domain Description: COG31 77 Location: 431 50-44242 bp Feature: gene Location: 44977-46662 bp Feature: RT Description: RVT_N Location: 45034-45274 bp Feature: RT Description: RVT_N Location: 45034-45274 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45322-45958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45322-45958 bp Feature: domain Description: GIIM Note: maturase Location: 46012-46243 bp Feature: domain Description: GIIM Note: maturase Location: 4601 2-46243 bp Feature: domain Description: HNH Note: nucleases Location: 46495-46633 bp Feature: domain Description: HNH Note: nucleases Location: 46495-46633 bp Feature: gene Location: 47743-51480 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 47851-48508 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 47851 -48508 bp Feature: domain Description: PRK09776 Location: 48721-49192 bp Feature: domain Description: PRK09776 Location: 48721 -491 92 bp Feature: domain Description: PAS Location: 49252-49774 bp Feature: domain Description: PAS Location: 49252-49774 bp Feature: domain Description: PRK10060 Location: 49783-51430 bp Feature: domain Description: PRK1 0060 Location: 49783-51 430 bp Feature: gene Location: 51587-53440 bp Feature: domain Description: PRK05658 Location: 51599-53438 bp Feature: domain Description: PRK05658 Location: 51 599-53438 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT NERD (pfam08378), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK05658 (RNA polymerase sigma factor RpoD; Validated)