myRT

myRT report for GCA_003412075.2_ASM341207v2

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Seq: QVDS02000010.1 Pseudomonas aeruginosa strain PABL021 NODE_10_length_87561_cov_71.5171, whole genome shotgun sequence (87561 bp)
Overview 1 RT 1: 2458-13150 bp 2 RT 2: 29409-38259 bp Neighborhood of RT #1 [2458, 13152] INT_Rci_Hp1_C RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [29409, 38288] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 2458-3216 bp Feature: gene Location: 3293-4387 bp Feature: domain Description: INT_Rci_Hp1_C Location: 3803-4304 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 3803-4304 bp Feature: gene Location: 4689-6374 bp Feature: RT Description: RVT_N Location: 4746-4986 bp Feature: RT Description: RVT_N Location: 4746-4986 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5034-5670 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5034-5670 bp Feature: domain Description: GIIM Note: maturase Location: 5724-5955 bp Feature: domain Description: GIIM Note: maturase Location: 5724-5955 bp Feature: domain Description: HNH Note: nucleases Location: 6207-6345 bp Feature: domain Description: HNH Note: nucleases Location: 6207-6345 bp Feature: gene Location: 7455-11192 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 7563-8220 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 7563-8220 bp Feature: domain Description: PRK09776 Location: 8433-8904 bp Feature: domain Description: PRK09776 Location: 8433-8904 bp Feature: domain Description: PAS Location: 8949-9486 bp Feature: domain Description: PAS Location: 8949-9486 bp Feature: domain Description: PRK10060 Location: 9495-11142 bp Feature: domain Description: PRK1 0060 Location: 9495-1 1 1 42 bp Feature: gene Location: 11299-13152 bp Feature: domain Description: PRK05658 Location: 11311-13150 bp Feature: domain Description: PRK05658 Location: 1 1 31 1 -1 31 50 bp Feature: gene Location: 29409-30623 bp Feature: domain Description: PRK10770 Location: 29421-30615 bp Feature: domain Description: PRK1 0770 Location: 29421 -3061 5 bp Feature: gene Location: 30682-33483 bp Feature: domain Description: LptD Location: 30877-33469 bp Feature: domain Description: LptD Location: 30877-33469 bp Feature: gene Location: 33616-35328 bp Feature: RT Description: RVT_N Location: 33673-33916 bp Feature: RT Description: RVT_N Location: 33673-3391 6 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33961-34597 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33961 -34597 bp Feature: domain Description: YkfC Location: 34804-34957 bp Feature: domain Description: YkfC Location: 34804-34957 bp Feature: domain Description: HNH Note: nucleases Location: 35134-35272 bp Feature: domain Description: HNH Note: nucleases Location: 351 34-35272 bp Feature: gene Location: 36601-37617 bp Feature: domain Description: COG3178 Location: 36604-37603 bp Feature: domain Description: COG31 78 Location: 36604-37603 bp Feature: gene Location: 37614-38288 bp Feature: domain Description: NTP_transferase_like_1 Location: 37620-38259 bp Feature: domain Description: NTP_transferase_like_1 Location: 37620-38259 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), INT_Rci_Hp1_C (cd00796), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase)
PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)