myRT

myRT report for GCA_003412145.2_ASM341214v2

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Seq: QVDT02000013.1 Pseudomonas aeruginosa strain PABL020 NODE_13_length_81307_cov_71.3036, whole genome shotgun sequence (81307 bp)
Overview 1 RT 1: 3-9887 bp Neighborhood of RT #1 [3, 9889] INT_Rci_Hp1_C RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Feature: gene Location: 3-1124 bp Feature: domain Description: INT_Rci_Hp1_C Location: 513-1014 bp Feature: domain Description: INT_Rci_Hp1 _C Location: 51 3-1 01 4 bp Feature: gene Location: 1426-3111 bp Feature: RT Description: RVT_N Location: 1483-1723 bp Feature: RT Description: RVT_N Location: 1 483-1 723 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1771-2407 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 771 -2407 bp Feature: domain Description: GIIM Note: maturase Location: 2461-2692 bp Feature: domain Description: GIIM Note: maturase Location: 2461 -2692 bp Feature: domain Description: HNH Note: nucleases Location: 2944-3082 bp Feature: domain Description: HNH Note: nucleases Location: 2944-3082 bp Feature: gene Location: 4192-7929 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 4300-4957 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 4300-4957 bp Feature: domain Description: PRK09776 Location: 5170-5641 bp Feature: domain Description: PRK09776 Location: 51 70-5641 bp Feature: domain Description: PAS Location: 5686-6223 bp Feature: domain Description: PAS Location: 5686-6223 bp Feature: domain Description: PRK10060 Location: 6232-7879 bp Feature: domain Description: PRK1 0060 Location: 6232-7879 bp Feature: gene Location: 8036-9889 bp Feature: domain Description: PRK05658 Location: 8048-9887 bp Feature: domain Description: PRK05658 Location: 8048-9887 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), INT_Rci_Hp1_C (cd00796), PRK05658 (RNA polymerase sigma factor RpoD; Validated)