myRT

myRT report for GCA_003412225.2_ASM341222v2

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Seq: QVDY02000119.1 Pseudomonas aeruginosa strain PABL014 NODE_119_length_15926_cov_95.6222, whole genome shotgun sequence (15926 bp)
Overview 1 RT 1: 1-2958 bp Neighborhood of RT #1 [1, 2958] RVT-GII GIIM Feature: gene Location: 1-375 bp Feature: gene Location: 779-2047 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1649 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 992-1 649 bp Feature: domain Description: GIIM Note: maturase Location: 1727-1949 bp Feature: domain Description: GIIM Note: maturase Location: 1 727-1 949 bp Feature: gene Location: 2197-2595 bp Feature: gene Location: 2779-2958 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: QVDY02000087.1 Pseudomonas aeruginosa strain PABL014 NODE_87_length_25084_cov_78.3032, whole genome shotgun sequence (25084 bp)
Overview 1 RT 1: 12754-19447 bp Neighborhood of RT #1 [12754, 19467] IV_pilus_PilQ DEAH_box_HrpB RVT-UG15 PBP2_HisK Feature: gene Location: 12754-13368 bp Feature: domain Description: IV_pilus_PilQ Location: 13144-13354 bp Feature: domain Description: IV_pilus_PilQ Location: 13144-13354 bp Feature: gene Location: 13683-16205 bp Feature: domain Description: DEAH_box_HrpB Location: 13695-16200 bp Feature: domain Description: DEAH_box_HrpB Location: 13695-162 00 bp Feature: gene Location: 16316-17617 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 16421-16835 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 1642 1-16835 bp Feature: gene Location: 18302-18709 bp Feature: gene Location: 18733-19467 bp Feature: domain Description: PBP2_HisK Location: 18835-19447 bp Feature: domain Description: PBP2 _HisK Location: 18835-19447 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IV_pilus_PilQ (TIGR02515), DEAH_box_HrpB (TIGR01970), RVT-UG15, PBP2_HisK (cd13704)