myRT

myRT report for GCA_003412325.2_ASM341232v2

Download annotations/find similar RTs

Seq: QVEI02000104.1 Pseudomonas aeruginosa strain PABL001 NODE_105_length_1644_cov_129.791, whole genome shotgun sequence (1644 bp)
Overview 1 RT 1: 1-1614 bp Neighborhood of RT #1 [1, 1643] RVT_N RVT-GII Feature: gene Location: 1-189 bp Feature: gene Location: 220-348 bp Feature: gene Location: 618-1643 bp Feature: RT Description: RVT_N Location: 675-912 bp Feature: RT Description: RVT_N Location: 675-91 2 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1614 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 963-1 61 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII

Seq: QVEI02000018.1 Pseudomonas aeruginosa strain PABL001 NODE_18_length_128998_cov_51.8992, whole genome shotgun sequence (128998 bp)
Overview 1 RT 1: 62068-70240 bp 2 RT 2: 88464-96693 bp Neighborhood of RT #1 [62068, 70248] COG3178 RVT_N RVT-GII YkfC HNH LptD PRK10770 Neighborhood of RT #2 [88464, 96797] PBP2_BvgS_HisK_like sensory_box sensory_box sensory_box sensory_box PRK10060 RVT_N RVT-GII GIIM HNH int HTH_XRE Feature: gene Location: 62068-63084 bp Feature: domain Description: COG3178 Location: 62071-63070 bp Feature: domain Description: COG3178 Location: 62 071-63070 bp Feature: gene Location: 63369-63515 bp Feature: gene Location: 64356-66068 bp Feature: RT Description: RVT_N Location: 64413-64656 bp Feature: RT Description: RVT_N Location: 64413-64656 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64701-65337 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 64701-65337 bp Feature: domain Description: YkfC Location: 65547-65697 bp Feature: domain Description: YkfC Location: 65547-65697 bp Feature: domain Description: HNH Note: nucleases Location: 65874-66012 bp Feature: domain Description: HNH Note: nucleases Location: 65874-66012 bp Feature: gene Location: 66201-68975 bp Feature: domain Description: LptD Location: 66396-68961 bp Feature: domain Description: LptD Location: 66396-68961 bp Feature: gene Location: 69034-70248 bp Feature: domain Description: PRK10770 Location: 69046-70240 bp Feature: domain Description: PRK10770 Location: 69046-702 40 bp Feature: gene Location: 88464-90728 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 88572-89229 bp Feature: domain Description: PBP2 _BvgS_HisK_like Location: 88572 -892 2 9 bp Feature: domain Description: sensory_box Location: 89397-89760 bp Feature: domain Description: sensory_box Location: 89397-89760 bp Feature: domain Description: sensory_box Location: 89772-90132 bp Feature: domain Description: sensory_box Location: 89772 -90132 bp Feature: domain Description: sensory_box Location: 90144-90510 bp Feature: domain Description: sensory_box Location: 90144-90510 bp Feature: domain Description: sensory_box Location: 90525-90714 bp Feature: domain Description: sensory_box Location: 9052 5-90714 bp Feature: gene Location: 90987-92201 bp Feature: domain Description: PRK10060 Location: 90993-92151 bp Feature: domain Description: PRK10060 Location: 90993-92 151 bp Feature: gene Location: 93282-94967 bp Feature: RT Description: RVT_N Location: 93339-93579 bp Feature: RT Description: RVT_N Location: 93339-93579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 93627-94263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9362 7-942 63 bp Feature: domain Description: GIIM Note: maturase Location: 94317-94548 bp Feature: domain Description: GIIM Note: maturase Location: 94317-94548 bp Feature: domain Description: HNH Note: nucleases Location: 94800-94938 bp Feature: domain Description: HNH Note: nucleases Location: 94800-94938 bp Feature: gene Location: 95084-96268 bp Feature: domain Description: int Location: 95087-96104 bp Feature: domain Description: int Location: 95087-96104 bp Feature: gene Location: 96273-96797 bp Feature: domain Description: HTH_XRE Location: 96579-96693 bp Feature: domain Description: HTH_XRE Location: 96579-96693 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), RVT_N (pfam13655), RVT-GII, YkfC (COG3344), HNH (pfam01844), LptD (COG1452), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), PBP2_BvgS_HisK_like (cd01007), sensory_box (TIGR00229), PRK10060 (cyclic di-GMP phosphodiesterase)
GIIM (pfam08388), int (PHA02601), HTH_XRE (smart00530)