myRT

myRT report for GCA_003412465.1_ASM341246v1

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Seq: QTJV01000002.1 Chitinophaga sp. K20C18050901 contig2, whole genome shotgun sequence (1141685 bp)
Overview 1 RT 1: 224068-228964 bp Neighborhood of RT #1 [224068, 228964] Couple_hipA HipA_C HTH_31 RVT-GII nSMase Jacalin_EEP Feature: gene Location: 224068-225315 bp Feature: domain Description: Couple_hipA Location: 224125-224443 bp Feature: domain Description: Couple_hipA Location: 2241 25-224443 bp Feature: domain Description: HipA_C Location: 224599-225235 bp Feature: domain Description: HipA_C Location: 224599-225235 bp Feature: gene Location: 225321-225617 bp Feature: domain Description: HTH_31 Location: 225375-225540 bp Feature: domain Description: HTH_31 Location: 225375-225540 bp Feature: gene Location: 226124-226552 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226175-226370 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2261 75-226370 bp Feature: gene Location: 227061-228437 bp Feature: domain Description: nSMase Location: 227223-227991 bp Feature: domain Description: nSMase Location: 227223-227991 bp Feature: domain Description: Jacalin_EEP Location: 228036-228429 bp Feature: domain Description: Jacalin_EEP Location: 228036-228429 bp Feature: gene Location: 228713-228964 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Couple_hipA (pfam13657), HipA_C (pfam07804), HTH_31 (pfam13560), RVT-GII, nSMase (cd09078), Jacalin_EEP (cd09615)

Seq: QTJV01000039.1 Chitinophaga sp. K20C18050901 contig39, whole genome shotgun sequence (9875 bp)
Overview 1 RT 1: 6347-9521 bp Neighborhood of RT #1 [6347, 9568] DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT_N RVT-GII GIIM McrA Feature: gene Location: 6347-7051 bp Feature: gene Location: 7106-7843 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7130-7691 bp Feature: domain Description: DDE_Tnp_IS66 Location: 7130-7691 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7712-7826 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 7712 -782 6 bp Feature: gene Location: 7898-9568 bp Feature: RT Description: RVT_N Location: 7928-8174 bp Feature: RT Description: RVT_N Location: 792 8-8174 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8216-8894 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 16-8894 bp Feature: domain Description: GIIM Note: maturase Location: 8984-9200 bp Feature: domain Description: GIIM Note: maturase Location: 8984-92 00 bp Feature: domain Description: McrA Location: 9263-9521 bp Feature: domain Description: McrA Location: 92 63-952 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), McrA (COG4058)

Seq: QTJV01000049.1 Chitinophaga sp. K20C18050901 contig49, whole genome shotgun sequence (3870 bp)
Overview 1 RT 1: 2-1904 bp Neighborhood of RT #1 [2, 1904] RVT-DGRs Feature: gene Location: 2-865 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5-413 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 5-413 bp Feature: gene Location: 872-1198 bp Feature: gene Location: 1200-1904 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs

Seq: QTJV01000007.1 Chitinophaga sp. K20C18050901 contig7, whole genome shotgun sequence (443645 bp)
Overview 1 RT 1: 350657-357240 bp Neighborhood of RT #1 [350657, 359891] TMAO_torS RVT-Retrons WGR_DNA_ligase HEAT_2 Feature: gene Location: 350657-352453 bp Feature: domain Description: TMAO_torS Location: 351272-352448 bp Feature: domain Description: TMAO_torS Location: 351272-3524 4 8 bp Feature: gene Location: 352620-352772 bp Feature: gene Location: 353026-354555 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 353572-354187 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 353572-354 187 bp Feature: gene Location: 355000-356646 bp Feature: gene Location: 356658-359891 bp Feature: domain Description: WGR_DNA_ligase Location: 356673-356892 bp Feature: domain Description: WGR_DNA_ligase Location: 356673-356892 bp Feature: domain Description: HEAT_2 Location: 357033-357240 bp Feature: domain Description: HEAT_2 Location: 357033-35724 0 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TMAO_torS (TIGR02956), RVT-Retrons, WGR_DNA_ligase (cd07998), HEAT_2 (pfam13646)