myRT

myRT report for GCA_003412515.1_ASM341251v1

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Seq: QPCF01000131.1 Pseudomonas syringae pv. syringae strain 555 Contig_131, whole genome shotgun sequence (17801 bp)
Overview 1 RT 1: 2380-6143 bp Neighborhood of RT #1 [2380, 6143] DUF3644 RVT-UG15 Feature: gene Location: 2380-2547 bp Feature: gene Location: 2569-3552 bp Feature: domain Description: DUF3644 Location: 2704-2935 bp Feature: domain Description: DUF3644 Location: 2704-2935 bp Feature: gene Location: 4013-5455 bp Feature: RT Description: RVT-UG15 Note: UG15 RT Location: 4469-4883 bp Feature: RT Description: RVT-UG1 5 Note: UG1 5 RT Location: 4469-4883 bp Feature: gene Location: 5489-5749 bp Feature: gene Location: 6009-6143 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3644 (pfam12358), RVT-UG15

Seq: QPCF01000132.1 Pseudomonas syringae pv. syringae strain 555 Contig_132, whole genome shotgun sequence (21025 bp)
Overview 1 RT 1: 9198-15337 bp Neighborhood of RT #1 [9198, 15564] Phage_holin_3_1 RVT-Retrons RVT-Retrons Prim-Pol primase_Cterm Feature: gene Location: 9198-9521 bp Feature: domain Description: Phage_holin_3_1 Location: 9216-9507 bp Feature: domain Description: Phage_holin_3_1 Location: 92 16-9507 bp Feature: gene Location: 9631-9816 bp Feature: gene Location: 9899-11410 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9911-10403 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 9911-10403 bp Feature: gene Location: 11135-11323 bp Feature: gene Location: 11362-11745 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11497-11743 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 11497-11743 bp Feature: gene Location: 12081-12542 bp Feature: gene Location: 12871-15564 bp Feature: domain Description: Prim-Pol Location: 12907-13489 bp Feature: domain Description: Prim-Pol Location: 12 907-13489 bp Feature: domain Description: primase_Cterm Location: 14692-15337 bp Feature: domain Description: primase_Cterm Location: 14692 -15337 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_holin_3_1 (pfam05106), RVT-Retrons, Prim-Pol (smart00943), primase_Cterm (TIGR01613)

Seq: QPCF01000164.1 Pseudomonas syringae pv. syringae strain 555 Contig_164, whole genome shotgun sequence (5608 bp)
Overview 1 RT 1: 215-2061 bp Neighborhood of RT #1 [215, 2061] RVT-GII Feature: gene Location: 215-1546 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 464-1154 bp Feature: gene Location: 1565-1735 bp Feature: gene Location: 1924-2061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII