myRT

myRT report for GCA_003419165.1_ASM341916v1

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Seq: PDBM01000030.1 Salmonella enterica strain PTVS001 NODE_30_length_61400_cov_38.8718, whole genome shotgun sequence (61400 bp)
Overview 1 RT 1: 3-2165 bp Neighborhood of RT #1 [3, 2185] RVT-Retrons TIR_2 HTH_Tnp_1 HTH_Hin_like Feature: gene Location: 3-1181 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6-462 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6-462 bp Feature: domain Description: TIR_2 Location: 786-1146 bp Feature: domain Description: TIR_2 Location: 786-1 1 46 bp Feature: gene Location: 1231-1668 bp Feature: domain Description: HTH_Tnp_1 Location: 1246-1363 bp Feature: domain Description: HTH_Tnp_1 Location: 1 246-1 363 bp Feature: gene Location: 2054-2185 bp Feature: domain Description: HTH_Hin_like Location: 2060-2165 bp Feature: domain Description: HTH_Hin_like Location: 2060-21 65 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_Tnp_1 (pfam01527), HTH_Hin_like (cd00569), RVT-Retrons, TIR_2 (pfam13676)

Seq: PDBM01000058.1 Salmonella enterica strain PTVS001 NODE_58_length_7497_cov_35.5474, whole genome shotgun sequence (7497 bp)
Overview 1 RT 1: 2-3757 bp Neighborhood of RT #1 [2, 3759] RVT-Retrons Prim_Zn_Ribbon COG3378 DUF5375 Feature: gene Location: 2-502 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 317-503 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 317-503 bp Feature: gene Location: 1091-3424 bp Feature: domain Description: Prim_Zn_Ribbon Location: 1181-1289 bp Feature: domain Description: Prim_Zn_Ribbon Location: 1181-12 89 bp Feature: domain Description: COG3378 Location: 1907-3416 bp Feature: domain Description: COG3378 Location: 1907-3416 bp Feature: gene Location: 3439-3759 bp Feature: domain Description: DUF5375 Location: 3442-3757 bp Feature: domain Description: DUF5375 Location: 3442 -3757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons