myRT

myRT report for GCA_003419305.1_ASM341930v1

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Seq: PDBL01000012.1 Salmonella enterica strain PTVS026 NODE_12_length_136727_cov_59.9366, whole genome shotgun sequence (136727 bp)
Overview 1 RT 1: 71620-77492 bp Neighborhood of RT #1 [71620, 77512] DUF5375 Prim_Zn_Ribbon COG3378 RVT-Retrons TIR_2 HTH_Tnp_1 HTH_Hin_like Feature: gene Location: 71620-71940 bp Feature: domain Description: DUF5375 Location: 71623-71938 bp Feature: domain Description: DUF5375 Location: 71 623-71 938 bp Feature: gene Location: 71955-74288 bp Feature: domain Description: Prim_Zn_Ribbon Location: 72045-72153 bp Feature: domain Description: Prim_Zn_Ribbon Location: 72045-721 53 bp Feature: domain Description: COG3378 Location: 72771-74280 bp Feature: domain Description: COG3378 Location: 72771 -74280 bp Feature: gene Location: 74877-76508 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 75192-75789 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 751 92-75789 bp Feature: domain Description: TIR_2 Location: 76113-76473 bp Feature: domain Description: TIR_2 Location: 761 1 3-76473 bp Feature: gene Location: 76558-76995 bp Feature: domain Description: HTH_Tnp_1 Location: 76573-76690 bp Feature: domain Description: HTH_Tnp_1 Location: 76573-76690 bp Feature: gene Location: 77381-77512 bp Feature: domain Description: HTH_Hin_like Location: 77387-77492 bp Feature: domain Description: HTH_Hin_like Location: 77387-77492 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF5375 (pfam17345), Prim_Zn_Ribbon (smart00778), COG3378 (Phage- or plasmid-associated DNA primase ), RVT-Retrons, TIR_2 (pfam13676), HTH_Tnp_1 (pfam01527), HTH_Hin_like (cd00569)