myRT

myRT report for GCA_003419895.1_ASM341989v1

Download annotations/find similar RTs

Seq: QPMM01000001.1 Chitinophaga sp. GDMCC 1.1288 contig1, whole genome shotgun sequence (1119860 bp)
Overview 1 RT 1: 812414-815589 bp Neighborhood of RT #1 [812414, 815837] HTH_XRE RVT-Retrons Arm-DNA-bind_5 Phage_int_SAM_5 INTN1_C_like Feature: gene Location: 812414-812695 bp Feature: gene Location: 812719-813006 bp Feature: domain Description: HTH_XRE Location: 812740-812890 bp Feature: domain Description: HTH_XRE Location: 81 2740-81 2890 bp Feature: gene Location: 813011-813820 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 813143-813659 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 81 31 43-81 3659 bp Feature: gene Location: 813942-814202 bp Feature: gene Location: 814401-815837 bp Feature: domain Description: Arm-DNA-bind_5 Location: 814449-814704 bp Feature: domain Description: Arm-DNA-bind_5 Location: 81 4449-81 4704 bp Feature: domain Description: Phage_int_SAM_5 Location: 814752-815058 bp Feature: domain Description: Phage_int_SAM_5 Location: 81 4752-81 5058 bp Feature: domain Description: INTN1_C_like Location: 815109-815589 bp Feature: domain Description: INTN1 _C_like Location: 81 51 09-81 5589 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons, Arm-DNA-bind_5 (pfam17293), Phage_int_SAM_5 (pfam13102), INTN1_C_like (cd01185)

Seq: QPMM01000003.1 Chitinophaga sp. GDMCC 1.1288 contig3, whole genome shotgun sequence (359707 bp)
Overview 1 RT 1: 160413-163483 bp Neighborhood of RT #1 [160413, 163483] HTH_XRE Cupin_2 MarC RVT-Retrons HTH_3 Feature: gene Location: 160413-160997 bp Feature: domain Description: HTH_XRE Location: 160446-160614 bp Feature: domain Description: HTH_XRE Location: 160446-160614 bp Feature: domain Description: Cupin_2 Location: 160770-160974 bp Feature: domain Description: Cupin_2 Location: 160770-160974 bp Feature: gene Location: 161090-161656 bp Feature: domain Description: MarC Location: 161102-161645 bp Feature: domain Description: MarC Location: 161102 -161645 bp Feature: gene Location: 161943-162893 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 162051-162579 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 162 051-162 579 bp Feature: gene Location: 162896-163186 bp Feature: domain Description: HTH_3 Location: 162926-163073 bp Feature: domain Description: HTH_3 Location: 162 92 6-163073 bp Feature: gene Location: 163232-163483 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), Cupin_2 (pfam07883), MarC (pfam01914), RVT-Retrons, HTH_3 (pfam01381)