myRT

myRT report for GCA_003421985.1_ASM342198v1

Download annotations/find similar RTs

Seq: BEBG01000001.1 Staphylococcus aureus DNA, scaffold1, strain: M6K094, whole genome shotgun sequence (704926 bp)
Overview 1 RT 1: 43988-49895 bp Neighborhood of RT #1 [43988, 49895] PRK08617 RVT-Retrons Feature: gene Location: 43988-45652 bp Feature: domain Description: PRK08617 Location: 43997-45644 bp Feature: domain Description: PRK0861 7 Location: 43997-45644 bp Feature: gene Location: 45950-46174 bp Feature: gene Location: 46902-47918 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47052-47589 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 47052-47589 bp Feature: gene Location: 48163-49440 bp Feature: gene Location: 49755-49895 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08617 (acetolactate synthase AlsS), RVT-Retrons

Seq: BEBG01000015.1 Staphylococcus aureus DNA, scaffold15, strain: M6K094, whole genome shotgun sequence (20198 bp)
Overview 1 RT 1: 2607-9491 bp Neighborhood of RT #1 [2607, 9505] Rve RVT-AbiK PinE lactococcin_972 Feature: gene Location: 2607-3281 bp Feature: domain Description: Rve Location: 2613-3255 bp Feature: domain Description: Rve Location: 2 613-32 55 bp Feature: gene Location: 4936-5544 bp Feature: gene Location: 6257-8029 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 6731-7121 bp Feature: RT Description: RVT-AbiK Note: AbiK RT Location: 6731-712 1 bp Feature: gene Location: 8153-8761 bp Feature: domain Description: PinE Location: 8156-8747 bp Feature: domain Description: PinE Location: 8156-8747 bp Feature: gene Location: 9212-9505 bp Feature: domain Description: lactococcin_972 Location: 9215-9491 bp Feature: domain Description: lactococcin_972 Location: 92 15-9491 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-AbiK, PinE (COG1961), lactococcin_972 (TIGR01653)

Seq: BEBG01000018.1 Staphylococcus aureus DNA, scaffold18, strain: M6K094, whole genome shotgun sequence (5264 bp)
Overview 1 RT 1: 151-5156 bp Neighborhood of RT #1 [151, 5156] Tnp_22_trimer Transposase_22 Tnp_22_dsRBD L1-EN RVT-GII Feature: gene Location: 151-969 bp Feature: domain Description: Tnp_22_trimer Location: 337-460 bp Feature: domain Description: Tnp_22_trimer Location: 3 3 7-460 bp Feature: domain Description: Transposase_22 Location: 472-760 bp Feature: domain Description: Transposase_22 Location: 472-760 bp Feature: domain Description: Tnp_22_dsRBD Location: 772-958 bp Feature: domain Description: Tnp_22_dsRBD Location: 772-958 bp Feature: gene Location: 1021-4839 bp Feature: domain Description: L1-EN Location: 1048-1729 bp Feature: domain Description: L1-EN Location: 1048-1729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2599-3256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2599-3 256 bp Feature: gene Location: 4905-5156 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tnp_22_trimer (pfam17489), Transposase_22 (pfam02994), Tnp_22_dsRBD (pfam17490), L1-EN (cd09076), RVT-GII

Seq: BEBG01000020.1 Staphylococcus aureus DNA, scaffold20, strain: M6K094, whole genome shotgun sequence (3590 bp)
Overview 1 RT 1: 121-3311 bp Neighborhood of RT #1 [121, 3439] RVT-UNC L1-EN Feature: gene Location: 121-1962 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 685-1315 bp Feature: RT Description: RVT-UNC Note: UNC RT Location: 685-1315 bp Feature: gene Location: 2093-3439 bp Feature: domain Description: L1-EN Location: 2597-3311 bp Feature: domain Description: L1-EN Location: 2597-3311 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR/RVT-GII/RVT-UG27(RVT-UNC), L1-EN (cd09076)