myRT

myRT report for GCA_003425685.1_ASM342568v1

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Seq: QJKM01000019.1 Rhizobium sp. NAU-18 Scaffold19, whole genome shotgun sequence (101695 bp)
Overview 1 RT 1: 73668-80757 bp Neighborhood of RT #1 [73668, 81878] SpoVK Peptidases_S8_Subtilisin_like_2 RVT-Retrons DEXQc_UvrD Feature: gene Location: 73668-74678 bp Feature: domain Description: SpoVK Location: 73968-74592 bp Feature: domain Description: SpoVK Location: 73968-74592 bp Feature: gene Location: 74682-77162 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 75492-76425 bp Feature: domain Description: Peptidases_S8_Subtilisin_like_2 Location: 75492-76425 bp Feature: gene Location: 77249-78589 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77654-78263 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 77654-78263 bp Feature: gene Location: 78621-79847 bp Feature: gene Location: 79905-81878 bp Feature: domain Description: DEXQc_UvrD Location: 80022-80757 bp Feature: domain Description: DEXQc_UvrD Location: 80022-80757 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SpoVK (COG0464), Peptidases_S8_Subtilisin_like_2 (cd04847), RVT-Retrons, DEXQc_UvrD (cd17932)

Seq: QJKM01000032.1 Rhizobium sp. NAU-18 Scaffold32, whole genome shotgun sequence (33416 bp)
Overview 1 RT 1: 9575-17759 bp Neighborhood of RT #1 [9575, 17791] PHA02517 RVT-GII GIIM Resolvase Recombinase Zn_ribbon_recom arc_metj PinE Zn_ribbon_recom HTH_17 RVT-GII PHA02517 Feature: gene Location: 9575-9706 bp Feature: gene Location: 9724-10428 bp Feature: domain Description: PHA02517 Location: 9976-10402 bp Feature: domain Description: PHA02 517 Location: 9976-10402 bp Feature: gene Location: 10259-10924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 10265-10403 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102 65-10403 bp Feature: domain Description: GIIM Note: maturase Location: 10475-10697 bp Feature: domain Description: GIIM Note: maturase Location: 10475-10697 bp Feature: gene Location: 11085-12779 bp Feature: domain Description: Resolvase Location: 11097-11538 bp Feature: domain Description: Resolvase Location: 11097-11538 bp Feature: domain Description: Recombinase Location: 11625-11988 bp Feature: domain Description: Recombinase Location: 1162 5-11988 bp Feature: domain Description: Zn_ribbon_recom Location: 12033-12216 bp Feature: domain Description: Zn_ribbon_recom Location: 12 033-12 2 16 bp Feature: gene Location: 12923-13252 bp Feature: domain Description: arc_metj Location: 13118-13235 bp Feature: domain Description: arc_metj Location: 13118-132 35 bp Feature: gene Location: 13854-14012 bp Feature: gene Location: 14005-16230 bp Feature: domain Description: PinE Location: 14050-14641 bp Feature: domain Description: PinE Location: 14050-14641 bp Feature: domain Description: Zn_ribbon_recom Location: 15013-15181 bp Feature: domain Description: Zn_ribbon_recom Location: 15013-15181 bp Feature: domain Description: HTH_17 Location: 15892-16015 bp Feature: domain Description: HTH_17 Location: 15892 -16015 bp Feature: gene Location: 16242-16772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16515-16767 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16515-16767 bp Feature: gene Location: 16954-17136 bp Feature: gene Location: 17390-17791 bp Feature: domain Description: PHA02517 Location: 17495-17759 bp Feature: domain Description: PHA02 517 Location: 17495-17759 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408), arc_metj (LOAD_arc_metj), PinE (COG1961), HTH_17 (pfam12728)