myRT

myRT report for GCA_003427175.1_ASM342717v1

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Seq: BHDY01000006.1 Klebsiella pneumoniae ntmc-EN DNA, sequence006, whole genome shotgun sequence (133953 bp)
Overview 1 RT 1: 126378-130555 bp Neighborhood of RT #1 [126378, 130555] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 126378-126698 bp Feature: gene Location: 127310-127735 bp Feature: domain Description: PHA02517 Location: 127331-127670 bp Feature: domain Description: PHA0251 7 Location: 1 27331 -1 27670 bp Feature: gene Location: 128330-129853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 128603-129335 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 28603-1 29335 bp Feature: domain Description: GIIM Note: maturase Location: 129410-129608 bp Feature: domain Description: GIIM Note: maturase Location: 1 2941 0-1 29608 bp Feature: gene Location: 129976-130311 bp Feature: domain Description: PHA02517 Location: 129979-130288 bp Feature: domain Description: PHA0251 7 Location: 1 29979-1 30288 bp Feature: gene Location: 130400-130555 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: BHDY01000039.1 Klebsiella pneumoniae ntmc-EN DNA, sequence039, whole genome shotgun sequence (48782 bp)
Overview 1 RT 1: 5668-12521 bp Neighborhood of RT #1 [5668, 12538] INT_P4_C Integrase_1 RVT-UG4 FimD FimC Feature: gene Location: 5668-6333 bp Feature: domain Description: INT_P4_C Location: 5773-6331 bp Feature: domain Description: INT_P4_C Location: 5773-6331 bp Feature: gene Location: 6594-7034 bp Feature: domain Description: Integrase_1 Location: 6600-6816 bp Feature: domain Description: Integrase_1 Location: 6600-6816 bp Feature: gene Location: 7091-9169 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7499-7943 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 7499-7943 bp Feature: gene Location: 9169-11778 bp Feature: domain Description: FimD Location: 9226-11767 bp Feature: domain Description: FimD Location: 92 2 6-11767 bp Feature: gene Location: 11810-12538 bp Feature: domain Description: FimC Location: 11858-12521 bp Feature: domain Description: FimC Location: 11858-12 52 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_P4_C (cd00801), Integrase_1 (pfam12835), RVT-UG4, FimD (COG3188), FimC (COG3121)

Seq: BHDY01000180.1 Klebsiella pneumoniae ntmc-EN DNA, sequence180, whole genome shotgun sequence (1492 bp)
Overview 1 RT 1: 3-1300 bp Neighborhood of RT #1 [3, 1491] RVT-Retrons Feature: gene Location: 3-422 bp Feature: gene Location: 595-1491 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 736-1300 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 73 6-13 00 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons