myRT

myRT report for GCA_003427525.1_ASM342752v1

Download annotations/find similar RTs

Seq: QNTI01000010.1 Escherichia coli strain L162 L162_S38_contig_10, whole genome shotgun sequence (27513 bp)
Overview 1 RT 1: 343-3825 bp Neighborhood of RT #1 [343, 3890] PHA02517 RVT-GII GIIM PHA02517 Feature: gene Location: 343-576 bp Feature: gene Location: 874-1233 bp Feature: domain Description: PHA02517 Location: 877-1231 bp Feature: domain Description: PHA0251 7 Location: 877-1 231 bp Feature: gene Location: 1350-2873 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1623-2355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 623-2355 bp Feature: domain Description: GIIM Note: maturase Location: 2430-2628 bp Feature: domain Description: GIIM Note: maturase Location: 2430-2628 bp Feature: gene Location: 2827-3252 bp Feature: gene Location: 3465-3890 bp Feature: domain Description: PHA02517 Location: 3489-3825 bp Feature: domain Description: PHA0251 7 Location: 3489-3825 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: QNTI01000041.1 Escherichia coli strain L162 L162_S38_contig_41, whole genome shotgun sequence (50561 bp)
Overview 1 RT 1: 690-4579 bp Neighborhood of RT #1 [690, 4821] RVT-UG1 GerD Feature: gene Location: 690-3161 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1302-1812 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 1302 -1812 bp Feature: gene Location: 3263-4378 bp Feature: gene Location: 4387-4821 bp Feature: domain Description: GerD Location: 4465-4579 bp Feature: domain Description: GerD Location: 4465-4579 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG1, GerD (pfam17898)

Seq: QNTI01000044.1 Escherichia coli strain L162 L162_S38_contig_44, whole genome shotgun sequence (42208 bp)
Overview 1 RT 1: 19372-23663 bp Neighborhood of RT #1 [19372, 23663] YesM RVT-GII GIIM RVT-GII Feature: gene Location: 19372-20634 bp Feature: domain Description: YesM Location: 19885-20626 bp Feature: domain Description: YesM Location: 19885-20626 bp Feature: gene Location: 20664-20834 bp Feature: gene Location: 21184-21705 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21190-21472 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21190-21472 bp Feature: domain Description: GIIM Note: maturase Location: 21520-21700 bp Feature: domain Description: GIIM Note: maturase Location: 21520-21700 bp Feature: gene Location: 21733-22272 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22063-22141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 22063 -22141 bp Feature: gene Location: 22303-22500 bp Feature: gene Location: 22758-23663 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YesM (COG2972), RVT-GII, GIIM (pfam08388)