myRT

myRT report for GCA_003427575.1_ASM342757v1

Download annotations/find similar RTs

Seq: QNSX01000120.1 Escherichia coli strain L110 L110_S26_contig_120, whole genome shotgun sequence (7026 bp)
Overview 1 RT 1: 1-2628 bp Neighborhood of RT #1 [1, 2636] InsE PHA02517 RVT-GII PRK10173 PRK10173 Feature: gene Location: 1-279 bp Feature: domain Description: InsE Location: 10-277 bp Feature: domain Description: InsE Location: 1 0-277 bp Feature: gene Location: 279-758 bp Feature: domain Description: PHA02517 Location: 339-693 bp Feature: domain Description: PHA0251 7 Location: 339-693 bp Feature: gene Location: 1350-1853 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1623-1692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 623-1 692 bp Feature: gene Location: 1892-2203 bp Feature: domain Description: PRK10173 Location: 1895-2114 bp Feature: domain Description: PRK1 01 73 Location: 1 895-21 1 4 bp Feature: gene Location: 2187-2636 bp Feature: domain Description: PRK10173 Location: 2190-2628 bp Feature: domain Description: PRK1 01 73 Location: 21 90-2628 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, PRK10173 (glucose-1-phosphatase/inositol phosphatase; Provisional)

Seq: QNSX01000018.1 Escherichia coli strain L110 L110_S26_contig_18, whole genome shotgun sequence (27723 bp)
Overview 1 RT 1: 5211-9152 bp Neighborhood of RT #1 [5211, 9152] RVT-Retrons Feature: gene Location: 5211-6350 bp Feature: gene Location: 6396-6563 bp Feature: gene Location: 6585-8357 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6744-7362 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 6744-7362 bp Feature: gene Location: 8578-8721 bp Feature: gene Location: 8913-9152 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: QNSX01000279.1 Escherichia coli strain L110 L110_S26_contig_279, whole genome shotgun sequence (5323 bp)
Overview 1 RT 1: 1843-4255 bp Neighborhood of RT #1 [1843, 4329] PHA02517 InsE RVT-GII RVT-GII IS285 Feature: gene Location: 1843-2544 bp Feature: domain Description: PHA02517 Location: 1861-2539 bp Feature: domain Description: PHA02517 Location: 1861-253 9 bp Feature: gene Location: 2685-2987 bp Feature: domain Description: InsE Location: 2688-2973 bp Feature: domain Description: InsE Location: 2688-2973 bp Feature: gene Location: 3026-3229 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3071-3227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 071-3 227 bp Feature: gene Location: 3263-3499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3266-3446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 266-3 446 bp Feature: gene Location: 3557-3694 bp Feature: gene Location: 3847-4329 bp Feature: domain Description: IS285 Location: 3877-4255 bp Feature: domain Description: IS285 Location: 3 877-4255 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), RVT-GII, IS285 (COG3328)

Seq: QNSX01000343.1 Escherichia coli strain L110 L110_S26_contig_343, whole genome shotgun sequence (2765 bp)
Overview 1 RT 1: 646-2518 bp Neighborhood of RT #1 [646, 2763] InsE PHA02517 RVT-GII GIIM Feature: gene Location: 646-1050 bp Feature: domain Description: InsE Location: 676-1012 bp Feature: domain Description: InsE Location: 676-1012 bp Feature: gene Location: 1079-1435 bp Feature: domain Description: PHA02517 Location: 1082-1391 bp Feature: domain Description: PHA02517 Location: 1082-1391 bp Feature: gene Location: 1552-2763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1558-2245 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1558-224 5 bp Feature: domain Description: GIIM Note: maturase Location: 2320-2518 bp Feature: domain Description: GIIM Note: maturase Location: 2320-2518 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: QNSX01000460.1 Escherichia coli strain L110 L110_S26_contig_460, whole genome shotgun sequence (2811 bp)
Overview 1 RT 1: 204-2805 bp Neighborhood of RT #1 [204, 2810] YeeP RVT-UG1 Feature: gene Location: 204-1076 bp Feature: domain Description: YeeP Location: 207-1074 bp Feature: domain Description: YeeP Location: 207-1074 bp Feature: gene Location: 1680-2810 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2292-2805 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 2292-2805 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-UG1