myRT

myRT report for GCA_003427695.1_ASM342769v1

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Seq: QNTG01000025.1 Escherichia coli strain L150 L150_S36_contig_25, whole genome shotgun sequence (31222 bp)
Overview 1 RT 1: 3-1223 bp Neighborhood of RT #1 [3, 1297] RVT-GII RVT-GII group_II_RT_mat IS285 Feature: gene Location: 3-197 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39-195 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 39-1 95 bp Feature: gene Location: 231-467 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234-414 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 234-41 4 bp Feature: gene Location: 460-672 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 463-661 bp Feature: domain Description: group_II_RT_mat Note: maturase Location: 463-661 bp Feature: gene Location: 815-1297 bp Feature: domain Description: IS285 Location: 845-1223 bp Feature: domain Description: IS285 Location: 845-1 223 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, group_II_RT_mat (TIGR04416), IS285 (COG3328)

Seq: QNTG01000035.1 Escherichia coli strain L150 L150_S36_contig_35, whole genome shotgun sequence (40373 bp)
Overview 1 RT 1: 18545-22828 bp Neighborhood of RT #1 [18545, 22836] RVT-GII RVT-GII GIIM YesM Feature: gene Location: 18545-19450 bp Feature: gene Location: 19708-19905 bp Feature: gene Location: 19936-20475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20266-20344 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 02 66-2 0344 bp Feature: gene Location: 20503-21024 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20509-20791 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 0509-2 0791 bp Feature: domain Description: GIIM Note: maturase Location: 20839-21019 bp Feature: domain Description: GIIM Note: maturase Location: 2 0839-2 1019 bp Feature: gene Location: 21346-21534 bp Feature: gene Location: 21574-22836 bp Feature: domain Description: YesM Location: 22087-22828 bp Feature: domain Description: YesM Location: 2 2 087-2 2 82 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), YesM (COG2972)

Seq: QNTG01000070.1 Escherichia coli strain L150 L150_S36_contig_70, whole genome shotgun sequence (16711 bp)
Overview 1 RT 1: 3838-9565 bp Neighborhood of RT #1 [3838, 9807] YeeP RVT-UG1 GerD Feature: gene Location: 3838-4023 bp Feature: gene Location: 4200-5072 bp Feature: domain Description: YeeP Location: 4203-5070 bp Feature: domain Description: YeeP Location: 4203 -5070 bp Feature: gene Location: 5676-8147 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 6288-6798 bp Feature: RT Description: RVT-UG1 Note: UG1 RT Location: 6288-6798 bp Feature: gene Location: 8249-9364 bp Feature: gene Location: 9373-9807 bp Feature: domain Description: GerD Location: 9451-9565 bp Feature: domain Description: GerD Location: 9451-9565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YeeP (COG3596), RVT-UG1, GerD (pfam17898)

Seq: QNTG01000073.1 Escherichia coli strain L150 L150_S36_contig_73, whole genome shotgun sequence (5038 bp)
Overview 1 RT 1: 1852-5035 bp Neighborhood of RT #1 [1852, 5035] PHA02517 RVT-GII GIIM Feature: gene Location: 1852-2085 bp Feature: gene Location: 2383-2742 bp Feature: domain Description: PHA02517 Location: 2386-2740 bp Feature: domain Description: PHA02517 Location: 2386-274 0 bp Feature: gene Location: 2859-4382 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3132-3864 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3132-3864 bp Feature: domain Description: GIIM Note: maturase Location: 3939-4137 bp Feature: domain Description: GIIM Note: maturase Location: 3939-4 137 bp Feature: gene Location: 4676-5035 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)