myRT

myRT report for GCA_003427805.1_ASM342780v1

Download annotations/find similar RTs

Seq: QNSZ01000118.1 Escherichia coli strain L114 L114_S28_contig_118, whole genome shotgun sequence (11084 bp)
Overview 1 RT 1: 3083-7219 bp Neighborhood of RT #1 [3083, 7219] DUF905 PRK13732 RVT-GII Intron_maturas2 HNHc Feature: gene Location: 3083-3316 bp Feature: domain Description: DUF905 Location: 3113-3311 bp Feature: domain Description: DUF905 Location: 31 1 3-331 1 bp Feature: gene Location: 3384-3836 bp Feature: domain Description: PRK13732 Location: 3390-3834 bp Feature: domain Description: PRK1 3732 Location: 3390-3834 bp Feature: gene Location: 4031-5932 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4298-5129 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4298-51 29 bp Feature: domain Description: Intron_maturas2 Location: 5243-5501 bp Feature: domain Description: Intron_maturas2 Location: 5243-5501 bp Feature: domain Description: HNHc Note: nucleases Location: 5675-5837 bp Feature: domain Description: HNHc Note: nucleases Location: 5675-5837 bp Feature: gene Location: 6674-6877 bp Feature: gene Location: 6929-7219 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF905 (pfam06006), PRK13732 (single-stranded DNA-binding protein; Provisional), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507)

Seq: QNSZ01000015.1 Escherichia coli strain L114 L114_S28_contig_15, whole genome shotgun sequence (133362 bp)
Overview 1 RT 1: 64141-68082 bp Neighborhood of RT #1 [64141, 68082] RVT-Retrons Feature: gene Location: 64141-64380 bp Feature: gene Location: 64687-64863 bp Feature: gene Location: 64936-66708 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65095-65713 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 65095-65713 bp Feature: gene Location: 66730-66897 bp Feature: gene Location: 66943-68082 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons

Seq: QNSZ01000160.1 Escherichia coli strain L114 L114_S28_contig_160, whole genome shotgun sequence (13706 bp)
Overview 1 RT 1: 10325-13696 bp Neighborhood of RT #1 [10325, 13696] autotrans_barl PHA02517 RVT-GII GIIM Feature: gene Location: 10325-10942 bp Feature: domain Description: autotrans_barl Location: 10448-10889 bp Feature: domain Description: autotrans_barl Location: 10448-10889 bp Feature: gene Location: 10945-11391 bp Feature: domain Description: PHA02517 Location: 10948-11389 bp Feature: domain Description: PHA02517 Location: 10948-113 89 bp Feature: gene Location: 11508-13031 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11781-12513 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 11781-12513 bp Feature: domain Description: GIIM Note: maturase Location: 12588-12786 bp Feature: domain Description: GIIM Note: maturase Location: 12588-12786 bp Feature: gene Location: 13325-13696 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT autotrans_barl (TIGR01414), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)

Seq: QNSZ01000097.1 Escherichia coli strain L114 L114_S28_contig_97, whole genome shotgun sequence (6079 bp)
Overview 1 RT 1: 1-3874 bp Neighborhood of RT #1 [1, 4245] SLATT_5 RVT-UG17 Caudo_TAP Macro_Appr_pase Feature: gene Location: 1-177 bp Feature: gene Location: 585-1289 bp Feature: domain Description: SLATT_5 Location: 747-1257 bp Feature: domain Description: SLATT_5 Location: 74 7-1257 bp Feature: gene Location: 1267-2637 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 1495-2101 bp Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 14 95-2101 bp Feature: gene Location: 2750-3334 bp Feature: domain Description: Caudo_TAP Location: 2966-3323 bp Feature: domain Description: Caudo_TAP Location: 2966-3323 bp Feature: gene Location: 3343-4245 bp Feature: domain Description: Macro_Appr_pase Location: 3361-3874 bp Feature: domain Description: Macro_Appr_pase Location: 3361-3874 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SLATT_5 (pfam18160), RVT-UG17, Caudo_TAP (pfam02413), Macro_Appr_pase (cd02900)