myRT

myRT report for GCA_003428165.1_ASM342816v1

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Seq: QLIQ01000004.1 Cysteiniphilum litorale strain DSM 101832 ZB100003, whole genome shotgun sequence (118188 bp)
Overview 1 RT 1: 106358-110262 bp Neighborhood of RT #1 [106358, 110402] YiaG RelE RVT-GII GIIM Cas1 Feature: gene Location: 106358-106648 bp Feature: domain Description: YiaG Location: 106388-106631 bp Feature: domain Description: YiaG Location: 1 06388-1 06631 bp Feature: gene Location: 106648-106968 bp Feature: domain Description: RelE Location: 106681-106909 bp Feature: domain Description: RelE Location: 1 06681 -1 06909 bp Feature: gene Location: 107714-108973 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 107933-108587 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 07933-1 08587 bp Feature: domain Description: GIIM Note: maturase Location: 108671-108899 bp Feature: domain Description: GIIM Note: maturase Location: 1 08671 -1 08899 bp Feature: gene Location: 109051-109242 bp Feature: gene Location: 109392-110402 bp Feature: domain Description: Cas1 Location: 109533-110262 bp Feature: domain Description: Cas1 Location: 1 09533-1 1 0262 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YiaG (COG2944), RelE (pfam06296), RVT-GII, GIIM (pfam08388), Cas1 (COG1518)

Seq: QLIQ01000033.1 Cysteiniphilum litorale strain DSM 101832 ZB100032, whole genome shotgun sequence (32043 bp)
Overview 1 RT 1: 19721-23949 bp Neighborhood of RT #1 [19721, 24524] DDE_Tnp_1 RVT-GII GIIM Resolvase Recombinase Zn_ribbon_recom Feature: gene Location: 19721-20668 bp Feature: domain Description: DDE_Tnp_1 Location: 20246-20606 bp Feature: domain Description: DDE_Tnp_1 Location: 2 02 46-2 0606 bp Feature: gene Location: 20762-21001 bp Feature: gene Location: 21172-22422 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21376-22033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 1376-2 2 033 bp Feature: domain Description: GIIM Note: maturase Location: 22114-22336 bp Feature: domain Description: GIIM Note: maturase Location: 2 2 114-2 2 336 bp Feature: gene Location: 22645-22803 bp Feature: gene Location: 22800-24524 bp Feature: domain Description: Resolvase Location: 22812-23253 bp Feature: domain Description: Resolvase Location: 2 2 812 -2 32 53 bp Feature: domain Description: Recombinase Location: 23343-23706 bp Feature: domain Description: Recombinase Location: 2 3343-2 3706 bp Feature: domain Description: Zn_ribbon_recom Location: 23748-23949 bp Feature: domain Description: Zn_ribbon_recom Location: 2 3748-2 3949 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DDE_Tnp_1 (pfam01609), RVT-GII, GIIM (pfam08388), Resolvase (smart00857), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: QLIQ01000040.1 Cysteiniphilum litorale strain DSM 101832 ZB100039, whole genome shotgun sequence (20409 bp)
Overview 1 RT 1: 11051-14637 bp Neighborhood of RT #1 [11051, 14637] WcaG RVT_N RVT-GII GIIM Feature: gene Location: 11051-11977 bp Feature: domain Description: WcaG Location: 11054-11954 bp Feature: domain Description: WcaG Location: 11054-11954 bp Feature: gene Location: 12041-12199 bp Feature: gene Location: 12297-13760 bp Feature: RT Description: RVT_N Location: 12336-12579 bp Feature: RT Description: RVT_N Location: 123 3 6-12579 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12624-13251 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12624-13 251 bp Feature: domain Description: GIIM Note: maturase Location: 13308-13533 bp Feature: domain Description: GIIM Note: maturase Location: 13 3 08-13 53 3 bp Feature: gene Location: 13939-14097 bp Feature: gene Location: 14332-14637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WcaG (COG0451), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)

Seq: QLIQ01000110.1 Cysteiniphilum litorale strain DSM 101832 ZB100110, whole genome shotgun sequence (2040 bp)
Overview 1 RT 1: 74-1166 bp Neighborhood of RT #1 [74, 1378] RVT-GII GIIM Feature: gene Location: 74-1378 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305-923 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 305-923 bp Feature: domain Description: GIIM Note: maturase Location: 968-1166 bp Feature: domain Description: GIIM Note: maturase Location: 968-1166 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)