myRT

myRT report for GCA_003431445.1_ASM343144v1

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Seq: QVXL01000033.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN051011 CFSAN05101133, whole genome shotgun sequence (32765 bp)
Overview 1 RT 1: 1138-4356 bp Neighborhood of RT #1 [1138, 4397] RVT-Retrons TIR-like Tra5 Feature: gene Location: 1138-1266 bp Feature: gene Location: 1413-1640 bp Feature: gene Location: 1671-2630 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1851-2373 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 851 -2373 bp Feature: gene Location: 2680-3519 bp Feature: domain Description: TIR-like Location: 3085-3439 bp Feature: domain Description: TIR-like Location: 3085-3439 bp Feature: gene Location: 3774-4397 bp Feature: domain Description: Tra5 Location: 3795-4356 bp Feature: domain Description: Tra5 Location: 3795-4356 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR-like (pfam10137), Tra5 (COG2801)

Seq: QVXL01000006.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN051011 CFSAN0510116, whole genome shotgun sequence (253184 bp)
Overview 1 RT 1: 187852-190188 bp Neighborhood of RT #1 [187852, 190188] RVT-Retrons HTH_XRE Feature: gene Location: 187852-188046 bp Feature: gene Location: 188045-188476 bp Feature: gene Location: 188616-189566 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 188796-189339 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 188796-189339 bp Feature: gene Location: 189544-189852 bp Feature: domain Description: HTH_XRE Location: 189556-189721 bp Feature: domain Description: HTH_XRE Location: 189556-18972 1 bp Feature: gene Location: 189889-190188 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, HTH_XRE (smart00530)

Seq: QVXL01000007.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN051011 CFSAN0510117, whole genome shotgun sequence (234731 bp)
Overview 1 RT 1: 174584-179770 bp Neighborhood of RT #1 [174584, 179805] TIGR02646 COG3950 RVT-Retrons proA Feature: gene Location: 174584-175360 bp Feature: domain Description: TIGR02646 Location: 174656-175184 bp Feature: domain Description: TIGR02646 Location: 174656-175184 bp Feature: gene Location: 175344-176972 bp Feature: domain Description: COG3950 Location: 175527-176700 bp Feature: domain Description: COG3 950 Location: 175527-176700 bp Feature: gene Location: 176974-177912 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 177073-177670 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 177073 -177670 bp Feature: gene Location: 178284-178472 bp Feature: gene Location: 178555-179805 bp Feature: domain Description: proA Location: 178582-179770 bp Feature: domain Description: proA Location: 178582-179770 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02646 (TIGR02646 family protein), COG3950 (Predicted ATP-binding protein involved in virulence ), RVT-Retrons, proA (TIGR00407)