myRT

myRT report for GCA_003431455.1_ASM343145v1

Download annotations/find similar RTs

Seq: QVXI01000027.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN051015 CFSAN05101527, whole genome shotgun sequence (65770 bp)
Overview 1 RT 1: 53186-55488 bp Neighborhood of RT #1 [53186, 55568] RVT-Retrons TIR-like Feature: gene Location: 53186-53314 bp Feature: gene Location: 53461-53688 bp Feature: gene Location: 53719-54678 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53899-54421 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53899-54421 bp Feature: gene Location: 54728-55105 bp Feature: gene Location: 55044-55568 bp Feature: domain Description: TIR-like Location: 55134-55488 bp Feature: domain Description: TIR-like Location: 551 34-55488 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR-like (pfam10137)

Seq: QVXI01000003.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN051015 CFSAN0510153, whole genome shotgun sequence (248384 bp)
Overview 1 RT 1: 116224-122379 bp Neighborhood of RT #1 [116224, 122561] PRK05658 PRK10201 RVT-UG11 5 Feature: gene Location: 116224-118206 bp Feature: domain Description: PRK05658 Location: 116362-118204 bp Feature: domain Description: PRK05658 Location: 116362 -1182 04 bp Feature: gene Location: 118330-118836 bp Feature: domain Description: PRK10201 Location: 118333-118831 bp Feature: domain Description: PRK102 01 Location: 118333-118831 bp Feature: gene Location: 119160-119924 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 119283-119736 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 1192 83-119736 bp Feature: gene Location: 120564-120731 bp Feature: gene Location: 120861-122561 bp Feature: domain Description: 5 Location: 122085-122379 bp Feature: domain Description: 5 Location: 12 2 085-12 2 379 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10201 (G/U mismatch-specific DNA glycosylase), RVT-UG11, 5 (PHA02596)

Seq: QVXI01000005.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN051015 CFSAN0510155, whole genome shotgun sequence (138498 bp)
Overview 1 RT 1: 107674-112649 bp Neighborhood of RT #1 [107674, 112649] groEL RVT_N RVT-GII GIIM HNHc DUF2188 Feature: gene Location: 107674-109320 bp Feature: domain Description: groEL Location: 107680-109306 bp Feature: domain Description: groEL Location: 107680-1093 06 bp Feature: gene Location: 109657-109983 bp Feature: gene Location: 110414-112087 bp Feature: domain Description: RVT_N Location: 110477-110711 bp Feature: domain Description: RVT_N Location: 110477-110711 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110765-111410 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 110765-111410 bp Feature: domain Description: GIIM Note: maturase Location: 111464-111695 bp Feature: domain Description: GIIM Note: maturase Location: 111464-111695 bp Feature: domain Description: HNHc Note: nucleases Location: 111905-112061 bp Feature: domain Description: HNHc Note: nucleases Location: 111905-112061 bp Feature: gene Location: 112236-112463 bp Feature: domain Description: DUF2188 Location: 112251-112428 bp Feature: domain Description: DUF2188 Location: 112251-112428 bp Feature: gene Location: 112515-112649 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT groEL (PRK12852), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), DUF2188 (pfam09954)