myRT

myRT report for GCA_003431465.1_ASM343146v1

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Seq: QVXK01000001.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN051013 CFSAN0510131, whole genome shotgun sequence (630691 bp)
Overview 1 RT 1: 166754-173089 bp Neighborhood of RT #1 [166754, 173091] 5 RVT-UG11 PRK10201 PRK05658 Feature: gene Location: 166754-168454 bp Feature: domain Description: 5 Location: 167978-168272 bp Feature: domain Description: 5 Location: 1 67978-1 68272 bp Feature: gene Location: 168584-168751 bp Feature: gene Location: 169391-170155 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 169514-169967 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 1 6951 4-1 69967 bp Feature: gene Location: 170479-170985 bp Feature: domain Description: PRK10201 Location: 170482-170980 bp Feature: domain Description: PRK1 0201 Location: 1 70482-1 70980 bp Feature: gene Location: 171109-173091 bp Feature: domain Description: PRK05658 Location: 171247-173089 bp Feature: domain Description: PRK05658 Location: 1 71 247-1 73089 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 5 (PHA02596), RVT-UG11, PRK10201 (G/U mismatch-specific DNA glycosylase), PRK05658 (RNA polymerase sigma factor RpoD; Validated)

Seq: QVXK01000002.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN051013 CFSAN0510132, whole genome shotgun sequence (492494 bp)
Overview 1 RT 1: 353270-356784 bp Neighborhood of RT #1 [353270, 356784] DUF4156 DUF2188 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 353270-353635 bp Feature: domain Description: DUF4156 Location: 353351-353627 bp Feature: domain Description: DUF4156 Location: 353351-35362 7 bp Feature: gene Location: 353978-354205 bp Feature: domain Description: DUF2188 Location: 353993-354170 bp Feature: domain Description: DUF2 188 Location: 353993-354170 bp Feature: gene Location: 354354-356027 bp Feature: domain Description: RVT_N Location: 354417-354651 bp Feature: domain Description: RVT_N Location: 354417-354651 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354705-355350 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354705-355350 bp Feature: domain Description: GIIM Note: maturase Location: 355404-355635 bp Feature: domain Description: GIIM Note: maturase Location: 355404-355635 bp Feature: domain Description: HNHc Note: nucleases Location: 355845-356001 bp Feature: domain Description: HNHc Note: nucleases Location: 355845-356001 bp Feature: gene Location: 356165-356401 bp Feature: gene Location: 356458-356784 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4156 (pfam13698), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)

Seq: QVXK01000020.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN051013 CFSAN05101320, whole genome shotgun sequence (57925 bp)
Overview 1 RT 1: 2359-5189 bp Neighborhood of RT #1 [2359, 5200] TIR-like RVT-Retrons InsE Feature: gene Location: 2359-2883 bp Feature: domain Description: TIR-like Location: 2449-2803 bp Feature: domain Description: TIR-like Location: 2449-2803 bp Feature: gene Location: 2822-3220 bp Feature: gene Location: 3249-4208 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3429-3951 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3 429-3 951 bp Feature: gene Location: 4239-4466 bp Feature: gene Location: 4898-5200 bp Feature: domain Description: InsE Location: 4907-5189 bp Feature: domain Description: InsE Location: 4907-5189 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIR-like (pfam10137), RVT-Retrons, InsE (COG2963)