myRT

myRT report for GCA_003431475.1_ASM343147v1

Download annotations/find similar RTs

Seq: QVXJ01000001.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN051014 CFSAN0510141, whole genome shotgun sequence (689702 bp)
Overview 1 RT 1: 53183-55488 bp 2 RT 2: 516625-522780 bp Neighborhood of RT #1 [53183, 55568] RVT-Retrons TIR-like Neighborhood of RT #2 [516625, 522962] PRK05658 PRK10201 RVT-UG11 5 Feature: gene Location: 53183-53314 bp Feature: gene Location: 53461-53688 bp Feature: gene Location: 53719-54678 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53899-54421 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 53899-54421 bp Feature: gene Location: 54728-55105 bp Feature: gene Location: 55044-55568 bp Feature: domain Description: TIR-like Location: 55134-55488 bp Feature: domain Description: TIR-like Location: 551 34-55488 bp Feature: gene Location: 516625-518607 bp Feature: domain Description: PRK05658 Location: 516763-518605 bp Feature: domain Description: PRK05658 Location: 51 6763-51 8605 bp Feature: gene Location: 518731-519237 bp Feature: domain Description: PRK10201 Location: 518734-519232 bp Feature: domain Description: PRK1 0201 Location: 51 8734-51 9232 bp Feature: gene Location: 519561-520325 bp Feature: RT Description: RVT-UG11 Note: UG11 RT Location: 519684-520137 bp Feature: RT Description: RVT-UG1 1 Note: UG1 1 RT Location: 51 9684-5201 37 bp Feature: gene Location: 520965-521132 bp Feature: gene Location: 521262-522962 bp Feature: domain Description: 5 Location: 522486-522780 bp Feature: domain Description: 5 Location: 522486-522780 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-Retrons, TIR-like (pfam10137), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10201 (G/U mismatch-specific DNA glycosylase), RVT-UG11, 5 (PHA02596)

Seq: QVXJ01000002.1 Salmonella enterica subsp. enterica serovar Mbandaka strain CFSAN051014 CFSAN0510142, whole genome shotgun sequence (466460 bp)
Overview 1 RT 1: 353297-356811 bp Neighborhood of RT #1 [353297, 356811] DUF4156 DUF2188 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 353297-353662 bp Feature: domain Description: DUF4156 Location: 353378-353654 bp Feature: domain Description: DUF4156 Location: 353378-353654 bp Feature: gene Location: 354005-354232 bp Feature: domain Description: DUF2188 Location: 354020-354197 bp Feature: domain Description: DUF2 188 Location: 35402 0-354197 bp Feature: gene Location: 354381-356054 bp Feature: domain Description: RVT_N Location: 354444-354678 bp Feature: domain Description: RVT_N Location: 354444-354678 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354732-355377 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354732 -355377 bp Feature: domain Description: GIIM Note: maturase Location: 355431-355662 bp Feature: domain Description: GIIM Note: maturase Location: 355431-355662 bp Feature: domain Description: HNHc Note: nucleases Location: 355872-356028 bp Feature: domain Description: HNHc Note: nucleases Location: 355872 -35602 8 bp Feature: gene Location: 356192-356428 bp Feature: gene Location: 356485-356811 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF4156 (pfam13698), DUF2188 (pfam09954), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)