myRT

myRT report for GCA_003431535.1_ASM343153v1

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Seq: QVXN01000001.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN050999 CFSAN0509991, whole genome shotgun sequence (253387 bp)
Overview 1 RT 1: 33650-35986 bp Neighborhood of RT #1 [33650, 35986] HTH_XRE RVT-Retrons Feature: gene Location: 33650-33949 bp Feature: gene Location: 33986-34294 bp Feature: domain Description: HTH_XRE Location: 33998-34163 bp Feature: domain Description: HTH_XRE Location: 33998-341 63 bp Feature: gene Location: 34272-35222 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34452-34995 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 34452-34995 bp Feature: gene Location: 35362-35793 bp Feature: gene Location: 35792-35986 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_XRE (smart00530), RVT-Retrons

Seq: QVXN01000002.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN050999 CFSAN0509992, whole genome shotgun sequence (238590 bp)
Overview 1 RT 1: 55130-60175 bp Neighborhood of RT #1 [55130, 60351] proA RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 55130-56380 bp Feature: domain Description: proA Location: 55157-56345 bp Feature: domain Description: proA Location: 55157-56345 bp Feature: gene Location: 56463-56651 bp Feature: gene Location: 57023-57961 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 57122-57719 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5712 2 -57719 bp Feature: gene Location: 57963-59591 bp Feature: domain Description: COG3950 Location: 58146-59319 bp Feature: domain Description: COG3950 Location: 58146-59319 bp Feature: gene Location: 59575-60351 bp Feature: domain Description: TIGR02646 Location: 59647-60175 bp Feature: domain Description: TIGR02 646 Location: 59647-60175 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT proA (TIGR00407), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: QVXN01000068.1 Salmonella enterica subsp. enterica serovar Saintpaul strain CFSAN050999 CFSAN05099968, whole genome shotgun sequence (14538 bp)
Overview 1 RT 1: 10268-14418 bp Neighborhood of RT #1 [10268, 14438] Tra5 TIR-like RVT-Retrons PHA02517 Feature: gene Location: 10268-10891 bp Feature: domain Description: Tra5 Location: 10289-10850 bp Feature: domain Description: Tra5 Location: 10289-10850 bp Feature: gene Location: 11146-12006 bp Feature: domain Description: TIR-like Location: 11572-11926 bp Feature: domain Description: TIR-like Location: 11572-11926 bp Feature: gene Location: 12035-12994 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12215-12737 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 12215-1273 7 bp Feature: gene Location: 13025-13252 bp Feature: gene Location: 13620-14438 bp Feature: domain Description: PHA02517 Location: 13647-14418 bp Feature: domain Description: PHA02517 Location: 13 647-14418 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), TIR-like (pfam10137), RVT-Retrons, PHA02517 (putative transposase OrfB; Reviewed)