myRT

myRT report for GCA_003431605.1_ASM343160v1

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Seq: PEDB01000017.1 Mycobacterium marinum strain DSM 43519 DSM43519_contig000017, whole genome shotgun sequence (72088 bp)
Overview 1 RT 1: 66753-70106 bp Neighborhood of RT #1 [66753, 70903] RVT-GII GIIM PHA02517 PHA02517 HTH_23 rve Feature: gene Location: 66753-66881 bp Feature: gene Location: 66997-67188 bp Feature: gene Location: 67470-68861 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67731-68418 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67731 -6841 8 bp Feature: domain Description: GIIM Note: maturase Location: 68493-68688 bp Feature: domain Description: GIIM Note: maturase Location: 68493-68688 bp Feature: gene Location: 68819-69244 bp Feature: domain Description: PHA02517 Location: 68984-69116 bp Feature: domain Description: PHA0251 7 Location: 68984-691 1 6 bp Feature: domain Description: PHA02517 Location: 69128-69221 bp Feature: domain Description: PHA0251 7 Location: 691 28-69221 bp Feature: gene Location: 69335-70903 bp Feature: domain Description: HTH_23 Location: 69392-69527 bp Feature: domain Description: HTH_23 Location: 69392-69527 bp Feature: domain Description: rve Location: 69761-70106 bp Feature: domain Description: rve Location: 69761 -701 06 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), HTH_23 (pfam13384), rve (pfam00665)

Seq: PEDB01000125.1 Mycobacterium marinum strain DSM 43519 DSM43519_contig000125, whole genome shotgun sequence (85166 bp)
Overview 1 RT 1: 70368-76203 bp Neighborhood of RT #1 [70368, 76304] YHI9 RVT-CRISPR-like RnaI Feature: gene Location: 70368-70784 bp Feature: gene Location: 70918-71706 bp Feature: domain Description: YHI9 Location: 70921-71698 bp Feature: domain Description: YHI9 Location: 7092 1-71698 bp Feature: gene Location: 71943-73274 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 72183-72804 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 72 183-72 804 bp Feature: gene Location: 73267-75402 bp Feature: gene Location: 75522-76304 bp Feature: domain Description: RnaI Location: 75624-76203 bp Feature: domain Description: RnaI Location: 7562 4-762 03 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YHI9 (COG0384), RVT-CRISPR, RnaI (COG3719)

Seq: PEDB01000137.1 Mycobacterium marinum strain DSM 43519 DSM43519_contig000137, whole genome shotgun sequence (6372 bp)
Overview 1 RT 1: 1620-6141 bp Neighborhood of RT #1 [1620, 6239] PE PE_PPE_C HTH_32 rve RVT-UG12 INT_ICEBs1_C_like Feature: gene Location: 1620-2444 bp Feature: domain Description: PE Location: 1623-1896 bp Feature: domain Description: PE Location: 1623 -1896 bp Feature: domain Description: PE_PPE_C Location: 2193-2433 bp Feature: domain Description: PE_PPE_C Location: 2193 -243 3 bp Feature: gene Location: 2994-3965 bp Feature: domain Description: HTH_32 Location: 3114-3333 bp Feature: domain Description: HTH_3 2 Location: 3 114-3 3 3 3 bp Feature: domain Description: rve Location: 3414-3798 bp Feature: domain Description: rve Location: 3 414-3 798 bp Feature: gene Location: 4608-5843 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 4641-5073 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 4641-5073 bp Feature: gene Location: 5886-6239 bp Feature: domain Description: INT_ICEBs1_C_like Location: 5955-6141 bp Feature: domain Description: INT_ICEBs1_C_like Location: 5955-6141 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PE (pfam00934), PE_PPE_C (pfam12484), HTH_32 (pfam13565), rve (pfam00665), RVT-UG12, INT_ICEBs1_C_like (cd01189)