myRT

myRT report for GCA_003431645.1_ASM343164v1

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Seq: PEDC01000007.1 Mycobacterium marinum strain DSM 44344 DSM44344_contig000007, whole genome shotgun sequence (85533 bp)
Overview 1 RT 1: 70372-76207 bp Neighborhood of RT #1 [70372, 76308] YHI9 RVT-CRISPR-like RnaI Feature: gene Location: 70372-70788 bp Feature: gene Location: 70922-71710 bp Feature: domain Description: YHI9 Location: 70925-71702 bp Feature: domain Description: YHI9 Location: 70925-71 702 bp Feature: gene Location: 71947-73278 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 72187-72808 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 721 87-72808 bp Feature: gene Location: 73271-75406 bp Feature: gene Location: 75526-76308 bp Feature: domain Description: RnaI Location: 75628-76207 bp Feature: domain Description: RnaI Location: 75628-76207 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YHI9 (COG0384), RVT-CRISPR, RnaI (COG3719)

Seq: PEDC01000062.1 Mycobacterium marinum strain DSM 44344 DSM44344_contig000062, whole genome shotgun sequence (256116 bp)
Overview 1 RT 1: 185573-190732 bp Neighborhood of RT #1 [185573, 190872] PRK06526 HTH_23 COG4584 RVT-GII GIIM HTH_21 Feature: gene Location: 185573-186385 bp Feature: domain Description: PRK06526 Location: 185660-186356 bp Feature: domain Description: PRK0652 6 Location: 185660-186356 bp Feature: gene Location: 186382-187899 bp Feature: domain Description: HTH_23 Location: 186385-186523 bp Feature: domain Description: HTH_2 3 Location: 186385-18652 3 bp Feature: domain Description: COG4584 Location: 186655-187246 bp Feature: domain Description: COG4584 Location: 186655-1872 46 bp Feature: gene Location: 188319-189710 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188580-189267 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 188580-1892 67 bp Feature: domain Description: GIIM Note: maturase Location: 189342-189537 bp Feature: domain Description: GIIM Note: maturase Location: 189342 -189537 bp Feature: gene Location: 190299-190427 bp Feature: gene Location: 190435-190872 bp Feature: domain Description: HTH_21 Location: 190576-190732 bp Feature: domain Description: HTH_2 1 Location: 190576-190732 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06526 (transposase; Provisional), HTH_23 (pfam13384), COG4584 (Transposase ), RVT-GII, GIIM (pfam08388), HTH_21 (pfam13276)