myRT

myRT report for GCA_003431655.1_ASM343165v1

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Seq: PEDD01000048.1 Mycobacterium marinum strain NCTC2275 NCTC2275_contig000048, whole genome shotgun sequence (86251 bp)
Overview 1 RT 1: 71453-77288 bp Neighborhood of RT #1 [71453, 77389] YHI9 RVT-CRISPR-like RnaI Feature: gene Location: 71453-71869 bp Feature: gene Location: 72003-72791 bp Feature: domain Description: YHI9 Location: 72006-72783 bp Feature: domain Description: YHI9 Location: 72006-72783 bp Feature: gene Location: 73028-74359 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 73268-73889 bp Feature: RT Description: RVT-CRISPR-like Note: CRISPR-like RT Location: 73268-73889 bp Feature: gene Location: 74352-76487 bp Feature: gene Location: 76607-77389 bp Feature: domain Description: RnaI Location: 76709-77288 bp Feature: domain Description: RnaI Location: 76709-77288 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YHI9 (COG0384), RVT-CRISPR, RnaI (COG3719)

Seq: PEDD01000097.1 Mycobacterium marinum strain NCTC2275 NCTC2275_contig000097, whole genome shotgun sequence (279433 bp)
Overview 1 RT 1: 172844-178322 bp Neighborhood of RT #1 [172844, 178339] PRK06526 HTH_23 rve RVT-GII GIIM PHA02517 InsE Feature: gene Location: 172844-173656 bp Feature: domain Description: PRK06526 Location: 172931-173627 bp Feature: domain Description: PRK0652 6 Location: 172 931-17362 7 bp Feature: gene Location: 173653-175170 bp Feature: domain Description: HTH_23 Location: 173656-173794 bp Feature: domain Description: HTH_2 3 Location: 173656-173794 bp Feature: domain Description: rve Location: 174028-174373 bp Feature: domain Description: rve Location: 17402 8-174373 bp Feature: gene Location: 175596-176987 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175857-176544 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 175857-176544 bp Feature: domain Description: GIIM Note: maturase Location: 176619-176814 bp Feature: domain Description: GIIM Note: maturase Location: 176619-176814 bp Feature: gene Location: 177576-178049 bp Feature: domain Description: PHA02517 Location: 177645-177975 bp Feature: domain Description: PHA02 517 Location: 177645-177975 bp Feature: gene Location: 178046-178339 bp Feature: domain Description: InsE Location: 178055-178322 bp Feature: domain Description: InsE Location: 178055-17832 2 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK06526 (transposase; Provisional), HTH_23 (pfam13384), rve (pfam00665), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963)

Seq: PEDD01000166.1 Mycobacterium marinum strain NCTC2275 NCTC2275_contig000166, whole genome shotgun sequence (6625 bp)
Overview 1 RT 1: 136-4744 bp Neighborhood of RT #1 [136, 4755] INT_ICEBs1_C_like RVT-UG12 HTH_32 rve PE PE_PPE_C Feature: gene Location: 136-489 bp Feature: domain Description: INT_ICEBs1_C_like Location: 205-391 bp Feature: domain Description: INT_ICEBs1_C_like Location: 205-3 91 bp Feature: gene Location: 532-1767 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 565-997 bp Feature: RT Description: RVT-UG12 Note: UG12 RT Location: 565-997 bp Feature: gene Location: 2410-3381 bp Feature: domain Description: HTH_32 Location: 2530-2749 bp Feature: domain Description: HTH_3 2 Location: 253 0-2749 bp Feature: domain Description: rve Location: 2830-3214 bp Feature: domain Description: rve Location: 283 0-3 214 bp Feature: gene Location: 3931-4755 bp Feature: domain Description: PE Location: 3934-4207 bp Feature: domain Description: PE Location: 3 93 4-4207 bp Feature: domain Description: PE_PPE_C Location: 4504-4744 bp Feature: domain Description: PE_PPE_C Location: 4504-4744 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_ICEBs1_C_like (cd01189), RVT-UG12, HTH_32 (pfam13565), rve (pfam00665), PE (pfam00934), PE_PPE_C (pfam12484)